NEWS
lande 0.1.0 (2026-10-16)
First release.
- Selection differentials and linear, quadratic and correlational gradients on
relative fitness, with p-values from the logistic model for survival and from
a Poisson or negative binomial model for counts.
- Cubic spline fitness functions with a bootstrap band, two-trait fitness
surfaces drawn only where there are data, and adaptive landscapes of mean
fitness for one or two traits.
count_family = "quasipoisson" or "nb" in univariate_spline(),
correlated_fitness_surface() and temporal_landscape() for overdispersed
counts; the spline and the surface report the dispersion.
by_group = TRUE in the spline and the surface fits each group on its own
and returns a list of fits.
- Several groups on one surface, with each group's mean and highest point
marked, and interior peaks told from maxima at the edge of the data.
- Fitness functions and landscapes fitted period by period.
- Bootstrap standard errors and percentile intervals for the gradients, and
leave-one-out (HC3) standard errors with
se_type = "hc3".
- Assumption checks in one table: multivariate normality of the traits, VIF,
rows per term, residuals or dispersion of the gradient model.
- Bumpus's sparrows, Martin's pupfish and two sets of Galapagos finches
bundled as datasets, with CSV copies of the pupfish and finch data in
extdata.
- A Shiny app that runs the analyses in a browser, opened with
run_app(),
which writes out the R calls that repeat an analysis with the current
settings.
canonical_analysis() rotates the gamma matrix to its canonical axes, with
double-regression standard errors, permutation p-values (Reynolds et al.
2010) and an optional bootstrap, and plot_canonical_axes() draws fitness
along them.
- Standard errors and a band on the GAM fitness surface, drawn with the plots'
uncertainty option, and peak_difference() to compare two points of a
surface, or each with the pass between them (route = "line" for the
straight line).
- The adaptive landscape reports how much of each simulated population falls
outside the data, and flags an optimum on the edge of the grid; the plot can
mark where the population leaves the data.
- A
clamp option on the landscape and the thin-plate surface holds predicted
fitness inside the range of the fitness type; on by default.