To cite the 'hsphase' package in publications, please use:

Ferdosi, M. H., Kinghorn, B. P., van der Werf, J. H. J., Lee, S. H., & Gondro, C. (2014). hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups. BMC Bioinformatics, 15(1), 172.<doi:10.1186/1471-2105-15-172>

Ferdosi, M. H., Kinghorn, B. P., van der Werf, J. H. J., & Gondro, C. (2014). Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypes. Genetics Selection Evolution, 46(1), 11.<doi:10.1186/1297-9686-46-11>

Ferdosi, M. H., & Boerner, V. (2014). A fast method for evaluating opposing homozygosity in large SNP data sets. Livestock Science, 166, 35-37.<doi:10.1016/j.livsci.2014.05.026>

Sahoo, S., Ferdosi, M. H., van der Werf, J. H. J., and de las Heras-Saldana, S., et al. (2025). Proc. Assoc. Advmt. Anim. Breed. Genet., 26, 323.

Ferdosi, M. H., & Gondro, C. (2014). hsphase: Phasing, pedigree reconstruction, sire imputation and recombination events for half-sib families.

Corresponding BibTeX entries:

  @Article{,
    title = {hsphase: an R package for pedigree reconstruction,
      detection of recombination events, phasing and imputation of
      half-sib family groups},
    author = {Mohammad H. Ferdosi and Brian P. Kinghorn and Julius H.
      J. {van der Werf} and Seung Hwan Lee and Cedric Gondro},
    journal = {BMC Bioinformatics},
    year = {2014},
    volume = {15},
    number = {1},
    pages = {172},
    doi = {10.1186/1471-2105-15-172},
    url = {https://link.springer.com/article/10.1186/1471-2105-15-172},
  }

  @Article{,
    title = {Detection of recombination events, haplotype
      reconstruction and imputation of sires using half-sib SNP
      genotypes},
    author = {Mohammad H. Ferdosi and Brian P. Kinghorn and Julius H.
      J. {van der Werf} and Cedric Gondro},
    journal = {Genetics Selection Evolution},
    year = {2014},
    volume = {46},
    number = {1},
    pages = {11},
    doi = {10.1186/1297-9686-46-11},
    url = {https://link.springer.com/article/10.1186/1297-9686-46-11},
    note = {PMID: 24495596},
  }

  @Article{,
    title = {A fast method for evaluating opposing homozygosity in
      large SNP data sets},
    author = {Mohammad H. Ferdosi and Vinzent Boerner},
    journal = {Livestock Science},
    year = {2014},
    volume = {166},
    pages = {35-37},
    note = {Genomics Applied to Livestock Production},
    doi = {10.1016/j.livsci.2014.05.026},
  }

  @Article{,
    title = {Proc. Assoc. Advmt. Anim. Breed. Genet.},
    author = {Shweta Sahoo and Mohammad H. Ferdosi and Julius H. J.
      {van der Werf} and Sara {de las Heras-Saldana}},
    journal = {Proc. Assoc. Advmt. Anim. Breed. Genet.},
    year = {2025},
    volume = {26},
    pages = {323},
  }

  @Manual{,
    title = {hsphase: Phasing, pedigree reconstruction, sire imputation
      and recombination events for half-sib families},
    author = {Mohammad H. Ferdosi and Cedric Gondro},
    year = {2014},
  }