Type: Package
Package: gllvmTMB
Title: Generalised Linear Latent Variable Models
Version: 0.7.1
Authors@R: 
    person("Shinichi", "Nakagawa", , "itchyshin@gmail.com",
           role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-7765-5182"))
Description: Fits multivariate generalised linear latent variable
        models using either long-format data or a wide data frame.
        Models support several response distributions and trait
        covariance structures, and can estimate correlations, shared
        latent axes, and trait-specific variances. Binary
        presence-absence data can be used for joint species
        distribution analyses. Optional animal, phylogenetic, spatial,
        and kernel covariance components are available. Estimation uses
        'Template Model Builder'. Spatial effects can use sparse
        Gaussian Markov random field constructions. This 0.7.1 release
        remains experimental: evidence for estimates is model- and
        regime-specific. Broad interval coverage is not certified; a
        0.94 coverage floor is documented only for one two-sided
        Gaussian total-variance profile setting.
License: GPL-3
Language: en-GB
Copyright: inst/COPYRIGHTS
URL: https://itchyshin.github.io/gllvmTMB/,
        https://github.com/itchyshin/gllvmTMB
BugReports: https://github.com/itchyshin/gllvmTMB/issues
Depends: R (>= 4.1.0)
Imports: assertthat, cli, fmesher, generics, graphics, lifecycle,
        Matrix, methods, rlang, stats, tidyselect, TMB (>= 1.8.0),
        utils
LinkingTo: BH, RcppEigen, TMB
Suggests: ape, DHARMa, detectseparation (>= 0.4.0), dplyr, future,
        future.apply, ggforce, ggplot2, galamm, glmmTMB, gllvm,
        JuliaCall, jsonlite, knitr, lme4, MASS, MCMCglmm, mgcv, mirt,
        mvtnorm, nadiv, rmarkdown, sf, testthat (>= 3.0.0), tibble,
        tidyr, tweedie, vegan, vdiffr, withr
VignetteBuilder: knitr
ByteCompile: true
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
SystemRequirements: GNU make, C++17
Config/roxygen2/version: 8.0.0
NeedsCompilation: yes
Packaged: 2026-10-28 23:34:33 UTC; root
Author: Shinichi Nakagawa [aut, cre, cph] (ORCID:
        <https://orcid.org/0000-0002-7765-5182>)
Maintainer: Shinichi Nakagawa <itchyshin@gmail.com>
Config/pak/sysreqs: make
Repository: https://cran.r-universe.dev
Date/Publication: 2026-10-28 21:45:14 UTC
RemoteUrl: https://github.com/cran/gllvmTMB
RemoteRef: HEAD
RemoteSha: ca1db6d43584ae5bd7c51096aa21793b363c37f4