# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "gllvm" in publications use:'
type: software
license: GPL-2.0-only
title: 'gllvm: Generalized Linear Latent Variable Models'
version: '2.0'
identifiers:
- type: doi
  value: 10.32614/CRAN.package.gllvm
abstract: Analysis of multivariate data using generalized linear latent variable models
  (gllvm). Estimation is performed using either the Laplace method, variational approximations,
  or extended variational approximations, implemented via TMB (Kristensen et al. (2016),
  <https://doi.org/10.18637/jss.v070.i05>).
authors:
- family-names: Niku
  given-names: Jenni
  email: jenni.m.e.niku@jyu.fi
- family-names: Brooks
  given-names: Wesley
- family-names: Herliansyah
  given-names: Riki
- family-names: Hui
  given-names: Francis K.C.
- family-names: Korhonen
  given-names: Pekka
- family-names: Taskinen
  given-names: Sara
- family-names: Veen
  given-names: Bert
  name-particle: van der
- family-names: Warton
  given-names: David I.
preferred-citation:
  type: manual
  title: 'gllvm: Generalized Linear Latent Variable Models'
  authors:
  - family-names: Niku
    given-names: Jenni
    email: jenni.m.e.niku@jyu.fi
  - family-names: Brooks
    given-names: Wesley
  - family-names: Herliansyah
    given-names: Riki
  - family-names: Hui
    given-names: Francis K. C.
  - family-names: Korhonen
    given-names: Pekka
  - family-names: Taskinen
    given-names: Sara
  - family-names: Veen
    given-names: Bert
    name-particle: van der
  - family-names: Warton
    given-names: David I.
  year: '2024'
  notes: R package version 2.0
repository: https://CRAN.R-project.org/package=gllvm
repository-code: https://github.com/JenniNiku/gllvm
url: https://jenniniku.github.io/gllvm/
date-released: '2024-11-22'
contact:
- family-names: Niku
  given-names: Jenni
  email: jenni.m.e.niku@jyu.fi
references:
- type: article
  title: gllvm - Fast analysis of multivariate abundance data with generalized linear
    latent variable models in R
  authors:
  - family-names: Niku
    given-names: Jenni
  - family-names: Hui
    given-names: Francis K. C.
  - family-names: Taskinen
    given-names: Sara
  - family-names: Warton
    given-names: David I.
  journal: Methods in Ecology and Evolution
  year: '2019'
  volume: '10'
  start: 2173-2182
- type: article
  title: Analyzing environmental-trait interactions in ecological communities with
    fourth-corner latent variable models
  authors:
  - family-names: Niku
    given-names: Jenni
  - family-names: Hui
    given-names: Francis K. C.
  - family-names: Taskinen
    given-names: Sara
  - family-names: Warton
    given-names: David I.
  journal: Environmetrics
  year: '2021'
  volume: '32'
  start: 1-17
- type: article
  title: Fast fitting of phylogenetic mixed effects models
  authors:
  - family-names: Veen
    given-names: Bert
    name-particle: van der
  - family-names: O'Hara
    given-names: Robert B.
  journal: arxiv
  year: '2024'
- type: article
  title: Model-based ordination for species with unequal niche widths
  authors:
  - family-names: Veen
    given-names: Bert
    name-particle: van der
  - family-names: Hui
    given-names: Francis K. C.
  - family-names: Hovstad
    given-names: Knut A.
  - family-names: Solbu
    given-names: Erik B.
  - family-names: O'Hara
    given-names: Robert B.
  journal: Methods in Ecology and Evolution
  year: '2021'
  volume: '12'
  start: 1288-1300
- type: article
  title: 'Concurrent ordination: Simultaneous unconstrained and constrained latent
    variable modelling'
  authors:
  - family-names: Veen
    given-names: Bert
    name-particle: van der
  - family-names: Hui
    given-names: Francis K. C.
  - family-names: Hovstad
    given-names: Knut A.
  - family-names: O'Hara
    given-names: Robert B.
  journal: Methods in Ecology and Evolution
  year: '2023'
  volume: '14'
  start: 683-695
- type: article
  title: Fast and universal estimation of latent variable models using extended variational
    approximations
  authors:
  - family-names: Korhonen
    given-names: Pekka
  - family-names: Hui
    given-names: Francis K. C.
  - family-names: Niku
    given-names: Jenni
  - family-names: Taskinen
    given-names: Sara
  journal: Statistics and Computing
  year: '2023'
  volume: '33'
  start: 1-16