Version: 0.0.6
Date: 2022-06-13
Category: with the case that the input file contains some protein ID(s)
        which are not
Text:

Version: 0.0.6
Date: 2022-06-13
Category: in the gene annotation file and hence are not in the
        CDSaaFile used by the
Text:

Version: 0.0.6
Date: 2022-06-13
Category: function. Accordingly, added one row at the end of the test
        data file
Text:

Version: 0.0.6
Date: 2022-06-13
Category: of the function
Text:
        transId_pfamDomainStartEnd_chr16_Zdomains_22examples_proteinID.txt

Version: 0.0.6
Date: 2022-06-13
Category: for one protein ID which is not in any CDSaaFile in order to
        test the
Text:

Version: 0.0.6
Date: 2022-06-13
Category: added code
Text: 2. Made one change in the document Vignettes (in Section 1) to
        state that the

Version: 0.0.6
Date: 2022-06-13
Category: package is in the CRAN repository.
Text:

Version: 0.0.5
Date: 2022-02-10
Category: with the case that there is no overlap between the input
        genomic loci and the
Text:

Version: 0.0.5
Date: 2022-02-10
Category: protein coding genes, by returning a data frame with the
        genomic regions and
Text:

Version: 0.0.5
Date: 2022-02-10
Category: result columns filled with NAs, instead of a short message
Text: 2. Still in the function genomicLocsToProteinSequence(), it now
        outputs all the amino

Version: 0.0.5
Date: 2022-02-10
Category: acids coded by the DNA bases. In the previous version it did
        not output the amino acid coded
Text:

Version: 0.0.5
Date: 2022-02-10
Category: by the last DNA bases if it needs some more DNA base after
        the current DNA sequences, which
Text:

Version: 0.0.5
Date: 2022-02-10
Category: looks not that intuitive
Text: 3. Updated the introduction document (vignette) of the package.
        4. Fixed an error caused by a new toolchain on Windows in which
        Perl installed on the system

Version: 0.0.5
Date: 2022-02-10
Category: does not automatically convert newlines on input to LF. The
        fix method had been
Text:

Version: 0.0.5
Date: 2022-02-10
Category: proposed by the maintainers of CRAN repository who
        encountered the issue at the first place
Text:

Version: 0.0.5
Date: 2022-02-10
Category: which was to replace all the "chomp;" in the two Perl scripts
        by "s/[\r\n
Text:

Version: 0.0.4
Category: with the case that there is no overlap between the input
        genomic loci and the
Text:

Version: 0.0.4
Category: protein coding genes.
Text:

Version: 0.0.3
Date: 2018-01-24
Category: files in the folders that they should not be created, more
        modifications were done
Text:

Version: 0.0.3
Date: 2018-01-24
Category: in this version, namely putting the DNA sequence file
        uncompressed from the
Text:

Version: 0.0.3
Date: 2018-01-24
Category: gz file to the temporary folder
Text:

Version: 0.0.2
Date: 2018-01-23
Category: genomicLocsToWholeDNASequence, in order to keep them
        consistent with other
Text:

Version: 0.0.2
Date: 2018-01-23
Category: function names
Text: 2. Removed "utils" from the import list in DESCRIPTION file,
        because it is not used by the package. 3. Addressed the issue
        of creating and writting some files in the folders that they
        should not be created, as raised by the CRAN staff, by using
        the temporary folder obtained by tempdir().

Version: 0.0.1
Date: 2017-12-12
Category: September - November 2017: the package was tested and
        reviewed
Text:

Version: 0.0.1
Date: 2017-12-12
Category: January - May 2017: the package was written
Text: