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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "genieclust" in publications use:'
type: software
license: AGPL-3.0-only
title: 'genieclust: Fast and Robust Hierarchical Clustering with Noise Points Detection'
version: 1.1.6
doi: 10.1016/j.softx.2021.100722
identifiers:
- type: doi
  value: 10.32614/CRAN.package.genieclust
- type: url
  value: https://clustering-benchmarks.gagolewski.com/
abstract: A retake on the Genie algorithm (Gagolewski, 2021 <DOI:10.1016/j.softx.2021.100722>)
  - a robust hierarchical clustering method (Gagolewski, Bartoszuk, Cena, 2016 <DOI:10.1016/j.ins.2016.05.003>).
  Now faster and more memory efficient; determining the whole hierarchy for datasets
  of 10M points in low dimensional Euclidean spaces or 100K points in high-dimensional
  ones takes only 1-2 minutes. Allows clustering with respect to mutual reachability
  distances so that it can act as a noise point detector or a robustified version
  of 'HDBSCAN*' (that is able to detect a predefined number of clusters and hence
  it does not dependent on the somewhat fragile 'eps' parameter). The package also
  features an implementation of inequality indices (the Gini, Bonferroni index), external
  cluster validity measures (e.g., the normalised clustering accuracy and partition
  similarity scores such as the adjusted Rand, Fowlkes-Mallows, adjusted mutual information,
  and the pair sets index), and internal cluster validity indices (e.g., the Calinski-Harabasz,
  Davies-Bouldin, Ball-Hall, Silhouette, and generalised Dunn indices). See also the
  'Python' version of 'genieclust' available on 'PyPI', which supports sparse data,
  more metrics, and even larger datasets.
authors:
- family-names: Gagolewski
  given-names: Marek
  email: marek@gagolewski.com
  orcid: https://orcid.org/0000-0003-0637-6028
preferred-citation:
  type: article
  title: 'genieclust: Fast and robust hierarchical clustering'
  authors:
  - family-names: Gagolewski
    given-names: Marek
    email: marek@gagolewski.com
    orcid: https://orcid.org/0000-0003-0637-6028
  journal: SoftwareX
  year: '2021'
  volume: '15'
  doi: 10.1016/j.softx.2021.100722
  start: '100722'
repository: https://CRAN.R-project.org/package=genieclust
repository-code: https://github.com/gagolews/genieclust
url: https://genieclust.gagolewski.com/
date-released: '2024-08-22'
contact:
- family-names: Gagolewski
  given-names: Marek
  email: marek@gagolewski.com
  orcid: https://orcid.org/0000-0003-0637-6028
references:
- type: article
  title: 'Genie: A new, fast, and outlier-resistant hierarchical clustering algorithm'
  authors:
  - family-names: Gagolewski
    given-names: Marek
  - family-names: Bartoszuk
    given-names: Maciej
  - family-names: Cena
    given-names: Anna
  journal: Information Sciences
  year: '2016'
  volume: '363'
  doi: 10.1016/j.ins.2016.05.003
  start: '8'
  end: '23'