Encoding: UTF-8
Package: geneExpressionFromGEO
Title: Easily Downloads a Gene Expression Dataset from a GEO Code and
        Retrieves the Gene Symbols of Its Probesets
Version: 1.3
Authors@R: person("Davide", "Chicco", email = "davidechicco@davidechicco.it", comment = c(ORCID = "0000-0001-9655-7142"),
                  role = c("aut", "cre"))
Description: A function that reads in the GEO code of a gene expression
        dataset, retrieves its data from GEO, (optionally) retrieves
        the gene symbols of the dataset, and returns a simple dataframe
        table containing all the data. Platforms available: GPL11532,
        GPL23126, GPL6244, GPL8300, GPL80, GPL96, GPL570, GPL571,
        GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884,
        GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression
        Omnibus. ID: identifier code. The GEO datasets are downloaded
        from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>. More
        information can be found in the following manuscript: Davide
        Chicco, "geneExpressionFromGEO: an R package to facilitate data
        reading from Gene Expression Omnibus (GEO)". Microarray Data
        Analysis, Methods in Molecular Biology, volume 2401, chapter
        12, pages 187-194, Springer Protocols, 2021,
        <doi:10.1007/978-1-0716-1839-4_12>.
BugReports: https://github.com/davidechicco/geneExpressionFromGEO/issues
Depends: R (>= 3.1.0)
License: GPL-3
URL: https://github.com/davidechicco/geneExpressionFromGEO
Imports: xml2, Biobase, annotate, GEOquery, utils
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2026-07-07 07:34:28 UTC; root
Author: Davide Chicco [aut, cre] (ORCID:
        <https://orcid.org/0000-0001-9655-7142>)
Maintainer: Davide Chicco <davidechicco@davidechicco.it>
Config/pak/sysreqs: zlib1g-dev
Repository: https://cran.r-universe.dev
Date/Publication: 2025-12-09 10:44:51 UTC
RemoteUrl: https://github.com/cran/geneExpressionFromGEO
RemoteRef: HEAD
RemoteSha: 3b94e0a56ae737fa26864f4651d7e743a69b1a0e