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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "freqTLS" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'freqTLS: Frequentist Inference for Thermal Load Sensitivity Models'
version: 0.1.0
abstract: A maximum-likelihood implementation of the thermal-load-sensitivity framework
  for thermal death-time modelling introduced by Noble, Arnold and Pottier in the
  'bayesTLS' package, providing the frequentist counterpart to that Bayesian workflow.
  The modelling idea and the four-parameter logistic parameterisation are theirs;
  'freqTLS' contributes a 'Template Model Builder' ('TMB') likelihood whose midpoint
  is written directly in terms of critical thermal maximum ('CTmax') and thermal sensitivity
  (z) so both headline quantities are estimable, and reports uncertainty through a
  unified trio of frequentist intervals -- Wald (delta), profile-likelihood, and bootstrap
  -- for binomial and beta-binomial survival counts and beta-distributed proportions.
  Column and formula interfaces support fixed and grouped designs plus limited independent
  random intercepts; prediction includes survival curves and deterministic heat-injury
  scenarios. Equivalence claims are restricted to the matched relative-threshold,
  constant-shape 'bayesTLS' configuration.
authors:
- family-names: Nakagawa
  given-names: Shinichi
  email: itchyshin@gmail.com
  orcid: https://orcid.org/0000-0002-7765-5182
- family-names: Arnold
  given-names: Pieter A.
  orcid: https://orcid.org/0000-0002-6158-7752
- family-names: Pottier
  given-names: Patrice
  orcid: https://orcid.org/0000-0003-2106-6597
- family-names: Noble
  given-names: Daniel W. A.
  orcid: https://orcid.org/0000-0001-9460-8743
preferred-citation:
  type: manual
  title: 'freqTLS: Frequentist Inference for Thermal Load Sensitivity Models'
  authors:
  - family-names: Nakagawa
    given-names: Shinichi
    email: itchyshin@gmail.com
    orcid: https://orcid.org/0000-0002-7765-5182
  - family-names: Arnold
    given-names: Pieter A.
    orcid: https://orcid.org/0000-0002-6158-7752
  - family-names: Pottier
    given-names: Patrice
    orcid: https://orcid.org/0000-0003-2106-6597
  - family-names: Noble
    given-names: Daniel W. A.
    orcid: https://orcid.org/0000-0001-9460-8743
  year: '2026'
  notes: R package version 0.1.0
  url: https://github.com/itchyshin/freqTLS
repository: https://cran.r-universe.dev
repository-code: https://github.com/itchyshin/freqTLS
commit: 5b8e8dcaf3ef62719efb79696d4d05fd67c70b27
url: https://itchyshin.github.io/freqTLS/
date-released: '2026-07-21'
contact:
- family-names: Nakagawa
  given-names: Shinichi
  email: itchyshin@gmail.com
  orcid: https://orcid.org/0000-0002-7765-5182
references:
- type: manual
  title: 'bayesTLS: Bayesian Thermal Load Sensitivity Models'
  authors:
  - family-names: Noble
    given-names: Daniel W. A.
  - family-names: Arnold
    given-names: Pieter A.
  - family-names: Pottier
    given-names: Patrice
  year: '2026'
  notes: R package; the thermal-load-sensitivity framework that freqTLS implements
    (manuscript in preparation). The brown-shrimp and life-stage zebrafish data were
    obtained from the CC BY 4.0 bayesTLS distribution; please cite bayesTLS when using
    them. Other datasets retain their component-specific licences and citations; see
    the entries below and inst/COPYRIGHTS in the source package.
  url: https://github.com/daniel1noble/bayesTLS
- type: generic
  title: 'Data for: Thermal Limits of Survival and Reproduction Depend on Stress Duration:
    A Case Study of Drosophila suzukii'
  authors:
  - family-names: Orsted
    given-names: Michael
  - family-names: Willot
    given-names: Quentin
  - family-names: Olsen
    given-names: Andreas Kirk
  - family-names: Kongsgaard
    given-names: Viktor
  - family-names: Overgaard
    given-names: Johannes
  year: '2024'
  doi: 10.5281/zenodo.10602268
  notes: Dataset, CC BY 4.0
- type: generic
  title: 'Data for: Interspecific Differences in Thermal Tolerance Landscape Explain
    Aphid Community Abundance under Climate Change'
  authors:
  - family-names: Li
    given-names: Y J
  - family-names: Chen
    given-names: S Y
  - family-names: Jorgensen
    given-names: L B
  - family-names: Overgaard
    given-names: J
  - family-names: Renault
    given-names: D
  - family-names: Colinet
    given-names: H
  - family-names: Ma
    given-names: C S
  year: '2023'
  doi: 10.5061/dryad.mcvdnck4j
  notes: 'Dataset, Dryad CC0. Associated article: Journal of Thermal Biology 114:
    103583, doi:10.1016/j.jtherbio.2023.103583.'
- type: generic
  title: 'Data and Code for: Oxygen Availability and Oxygen Delivery but Not Oxidative
    Stress Shape Heat Tolerance in Diploid and Triploid Zebrafish Larvae'
  authors:
  - family-names: Saruhashi
    given-names: S
  - family-names: Boerrigter
    given-names: J G J
  - family-names: Hooymans
    given-names: M H L
  - family-names: Sinclair
    given-names: B J
  - family-names: Verberk
    given-names: W C E P
  year: '2026'
  doi: 10.5281/zenodo.20075355
  notes: 'Dataset, CC BY 4.0. Associated article: Journal of Experimental Biology
    229(10): jeb251548, doi:10.1242/jeb.251548.'