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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "fluxible" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'fluxible: Ecosystem Gas Fluxes Calculations for Closed Loop Chamber Setup'
version: 1.4.0
doi: 10.1111/2041-210x.70161
identifiers:
- type: doi
  value: 10.32614/CRAN.package.fluxible
abstract: 'Toolbox to process raw data from closed loop flux chamber (or tent) setups
  into ecosystem gas fluxes usable for analysis. It goes from a data frame of gas
  concentration over time (which can contain several measurements) and a meta data
  file indicating which measurement was done when, to a data frame of ecosystem gas
  fluxes including quality diagnostics. Organized with one function per step, maximizing
  user flexibility and backwards compatibility. Different models to estimate the fluxes
  from the raw data are available: exponential as described in Zhao et al (2018) <https://doi.org/10.1016/j.agrformet.2018.08.022>,
  exponential as described in Hutchinson and Mosier (1981) <https://doi.org/10.2136/sssaj1981.03615995004500020017x>,
  quadratic, and linear. Other functions include quality assessment, plotting for
  visual check, calculation of fluxes based on the setup specific parameters (chamber
  size, plot area, ...), gross primary production and transpiration rate calculation,
  and light response curves.'
authors:
- family-names: Gaudard
  given-names: Joseph
  email: joseph.gaudard@pm.me
  orcid: https://orcid.org/0000-0002-6989-7624
- family-names: Telford
  given-names: Richard James
  email: richard.telford@uib.no
  orcid: https://orcid.org/0000-0001-9826-3076
preferred-citation:
  type: article
  title: 'fluxible: An R package to process ecosystem gas fluxes from closed-loop
    chambers in an automated and reproducible way'
  authors:
  - family-names: Gaudard
    given-names: Joseph
    email: joseph.gaudard@pm.me
    orcid: https://orcid.org/0000-0002-6989-7624
  - family-names: Telford
    given-names: Richard J
  - family-names: Chacon-Labella
    given-names: Julia
  - family-names: Dawson
    given-names: Hilary Rose
  - family-names: Enquist
    given-names: Brian
  - family-names: Töpper
    given-names: Joachim P
  - family-names: Trepel
    given-names: Jonas
  - family-names: Vandvik
    given-names: Vigdis
  - family-names: Baumane
    given-names: Marta
  - family-names: Birkeli
    given-names: Kristine
  - family-names: Holle
    given-names: Mukhlish Jamal Musa
  - family-names: Hupp
    given-names: Jason R
  - family-names: Santos-Andrade
    given-names: Paul Efren
  - family-names: Satriawan
    given-names: Tin Widyani
  - family-names: Halbritter
    given-names: Aud H
  year: '2025'
  journal: Methods in Ecology and Evolution
  volume: '16'
  issue: '11'
  issn: 2041-210X
  doi: 10.1111/2041-210x.70161
  keywords:
  - ecosystem gas fluxes
  - flux chambers
  - greenhouse gas emissions
  - R package
  - reproducible workflow
  start: '2560'
  end: '2568'
repository: https://cran.r-universe.dev
repository-code: https://github.com/Plant-Functional-Trait-Course/fluxible
commit: 8d327d2ade167ff6d1c0bd7332df5a32db79be8b
url: https://plant-functional-trait-course.github.io/fluxible/
date-released: '2026-07-22'
contact:
- family-names: Gaudard
  given-names: Joseph
  email: joseph.gaudard@pm.me
  orcid: https://orcid.org/0000-0002-6989-7624