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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "enviPathR" in publications use:'
type: software
license: Artistic-2.0
title: 'enviPathR: Client for the ''enviPath'' ''RESTful'' API'
version: 1.0.0
doi: 10.1186/s13321-024-00881-6
abstract: The environmental pathway database ('enviPath') is a key resource for the
  functional annotation and pathway prediction of microbial communities, providing
  knowledge on biotransformation pathways along with the chemical reactions and produced
  compounds. This package enables the programmatic access to 'enviPath' by porting
  the database 'RESTful' API from R. This includes methods to both retrieve entries
  and predict pathways for custom compounds.
authors:
- family-names: Benedetti
  given-names: Giulio
  email: giulio.benedetti@utu.fi
  orcid: https://orcid.org/0000-0002-8732-7692
preferred-citation:
  type: article
  title: 'Advancements in biotransformation pathway prediction: enhancements, datasets,
    and novel functionalities in enviPath'
  authors:
  - family-names: Hafner
    given-names: Jasmin
  - family-names: Lorsbach
    given-names: Tim
  - family-names: Schmidt
    given-names: Sebastian
  - family-names: Brydon
    given-names: Liam
  - family-names: Dost
    given-names: Katharina
  - family-names: Zhang
    given-names: Kunyang
  - family-names: Fenner
    given-names: Kathrin
  - family-names: Wicker
    given-names: Jörg
  journal: Journal of Cheminformatics
  year: '2024'
  volume: '16'
  issue: '1'
  doi: 10.1186/s13321-024-00881-6
  start: '93'
repository: https://cran.r-universe.dev
repository-code: https://github.com/enviPath/enviPathR
commit: 8127bb47b2e2ff6afe165c6a560f850d44025e54
url: https://envipath.github.io/enviPathR/
date-released: '2026-10-14'
contact:
- family-names: Benedetti
  given-names: Giulio
  email: giulio.benedetti@utu.fi
  orcid: https://orcid.org/0000-0002-8732-7692