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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "dartR.popgen" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'dartR.popgen: Analysing ''SNP'' and ''Silicodart'' Data Generated by Genome-Wide
  Restriction Fragment Analysis'
version: 1.0.0
doi: 10.1111/1755-0998.12745
identifiers:
- type: doi
  value: 10.32614/CRAN.package.dartR.popgen
- type: url
  value: https://green-striped-gecko.github.io/dartR/
abstract: Facilitates the analysis of SNP (single nucleotide polymorphism) and silicodart
  (presence/absence) data. 'dartR.popgen' provides a suit of functions to analyse
  such data in a population genetics context. It provides several functions to calculate
  population genetic metrics and to study population structure. Quite a few functions
  need additional software to be able to run (gl.run.structure(), gl.blast(), gl.LDNe()).
  You find detailed description in the help pages how to download and link the packages
  so the function can run the software. 'dartR.popgen' is part of the the 'dartRverse'
  suit of packages. Gruber et al. (2018) <https://doi.org/10.1111/1755-0998.12745>.
  Mijangos et al. (2022) <https://doi.org/10.1111/2041-210X.13918>.
authors:
- family-names: Gruber
  given-names: Bernd
  email: bernd.gruber@canberra.edu.au
- family-names: Georges
  given-names: Arthur
  email: georges@aerg.edu.au
- family-names: Mijangos
  given-names: Jose L.
  email: Luis.MijangosAraujo@canberra.edu.au
- family-names: Pacioni
  given-names: Carlo
  email: carlo.pacioni@delwp.vic.gov.au
preferred-citation:
  type: article
  title: 'dartr: An r package to facilitate analysis of SNP data generated from reduced
    representation genome sequencing'
  authors:
  - family-names: Gruber
    given-names: Bernd
    email: bernd.gruber@canberra.edu.au
  - family-names: Unmack
    given-names: Peter J
  - family-names: Berry
    given-names: Oliver F
  - family-names: Georges
    given-names: Arthur
    email: georges@aerg.edu.au
  doi: 10.1111/1755-0998.12745
  journal: Molecular Ecology Resources
  keywords:
  - bioinformatics
  - next-generation-sequencing
  - phylogenomics
  - SNPs
  - population genomics
  - R pacakge
  - RADSeq
  volume: '18'
  year: '2018'
  start: '691'
  end: '699'
repository: https://CRAN.R-project.org/package=dartR.popgen
url: https://groups.google.com/g/dartr?pli=1
date-released: '2024-06-28'
contact:
- family-names: Gruber
  given-names: Bernd
  email: bernd.gruber@canberra.edu.au
references:
- type: article
  title: 'dartR v2: An accessible genetic analysis platform for conservation, ecology
    and agriculture'
  authors:
  - family-names: Mijangos
    given-names: Jose Luis
  - family-names: Gruber
    given-names: Bernd
  - family-names: Berry
    given-names: Oliver F
  - family-names: Pacioni
    given-names: Carlo
  - family-names: Georges
    given-names: Arthur
  journal: Methods in Ecology and Evolution
  year: '2022'
  doi: 10.1111/2041-210X.13918