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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "craftgrn" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'craftgrn: Integrative Chromatin Accessibility and RNA Framework for Gene Regulatory
  Networks'
version: 0.1.6
abstract: Provides a reproducible framework for constructing and comparing gene regulatory
  networks by integrating chromatin accessibility footprint scores with matched RNA
  expression data. It implements context-specific enhancer-gene linking, transcription
  factor focused network analysis, differential network analysis, and regulatory topic
  modeling workflows for systematic exploration of gene regulation across conditions.
  Methodological background is available at <https://doi.org/10.1038/s41467-020-18035-1>,
  <https://www.jmlr.org/papers/v3/blei03a.html>, and <https://doi.org/10.48550/arXiv.1510.08628>.
authors:
- family-names: Li
  given-names: Yaoxiang
  email: liyaoxiang@outlook.com
- family-names: Yi
  given-names: Chunling
repository: https://cran.r-universe.dev
repository-code: https://github.com/oncologylab/craftgrn
commit: 33e8d3589c5837d32b687e5357100372775a60b1
url: https://oncologylab.github.io/craftgrn/
date-released: '2026-06-18'
contact:
- family-names: Li
  given-names: Yaoxiang
  email: liyaoxiang@outlook.com