NEWS
craftgrn 0.1.7 (2026-06-19)
- Updated DESCRIPTION references to include author-year text for the next CRAN
update.
- Fixed a CRAN macOS test failure by comparing config-resolved relative paths
against the canonical project directory path.
craftgrn 0.1.6 (2026-06-18)
- Revised DESCRIPTION references to avoid CRAN incoming spell-check notes and
replaced the arXiv URL reference with the requested arXiv DOI format.
craftgrn 0.1.5
- Addressed CRAN resubmission feedback by adding method references to
DESCRIPTION, completing value documentation, replacing
\dontrun{} examples,
avoiding default writes to the working directory, and removing a fixed seed
from package function code.
craftgrn 0.1.4
- Added production-oriented Module 3 APIs for regulatory topic modeling:
run_topic_modeling(), module3_construct_docs(),
module3_train_topic_models(), module3_extract_topics(), and
build_module3_qc_report().
- Added reusable Module 3 topic-input caches and compact pass-only topic-link
output as the default production behavior.
- Added
visualize_topic_modeling_results() and
visualize_differential_grns() for standard Module 3 result browsers.
craftgrn 0.1.3
- Fixed Windows incoming pretest failures by normalizing path comparisons in
report tests and hardening temporary topic-model fixture directory creation.
- Revised CRAN-facing package metadata wording to reduce incoming
spell-check notes for abbreviated scientific terms.
craftgrn 0.1.2
- Initial CRAN submission candidate.
- Added Module 1 TFBS prediction, Module 2 TF-target prediction, and Module 3
regulatory topic modeling workflows.
- Added package-native QC reports and pkgdown documentation.