Package: cooccure
Title: Co-Occurrence Network Construction and Manipulation
Version: 0.4.0
Authors@R: c(
    person("Mohammed", "Saqr", email = "saqr@saqr.me",
           role = c("aut", "cre", "cph")),
    person("Sonsoles", "López-Pernas", email = "sonsoles.lopez@uef.fi",
           role = c("aut", "cph")),
    person("Kamila", "Misiejuk", role = c("aut", "cph")))
Description: Constructs co-occurrence networks from several types of
        input data, such as delimited fields, long/bipartite tables,
        binary matrices, or wide sequences. Returns tidy edge data
        frames and supports optional scaling, splitting into several
        networks, thresholding, and subsetting. Provides eight
        similarity measures, including Jaccard, cosine, and association
        strength. Supports export to several network and file formats.
        Network construction and analysis methods follow Saqr,
        Lopez-Pernas, Conde, and Hernandez-Garcia (2024,
        <doi:10.1007/978-3-031-54464-4_15>).
License: MIT + file LICENSE
Encoding: UTF-8
Language: en-US
LazyData: true
RoxygenNote: 7.3.3
Imports: graphics, Matrix, methods, stats, utils
Suggests: igraph, cograph, Nestimate, tidygraph, testthat (>= 3.0.0),
        knitr, rmarkdown, shiny, DT
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
URL: https://github.com/mohsaqr/cooccure
BugReports: https://github.com/mohsaqr/cooccure/issues
NeedsCompilation: no
Packaged: 2026-07-22 14:45:50 UTC; root
Author: Mohammed Saqr [aut, cre, cph], Sonsoles López-Pernas [aut,
        cph], Kamila Misiejuk [aut, cph]
Maintainer: Mohammed Saqr <saqr@saqr.me>
Repository: https://cran.r-universe.dev
Date/Publication: 2026-07-22 14:30:16 UTC
RemoteUrl: https://github.com/cran/cooccure
RemoteRef: HEAD
RemoteSha: 5c954f6a58bc1ad165851e1a2c6a7edcfd59663f