Type: Package
Package: bonsaiforest
Title: Shrinkage Based Forest Plots
Version: 0.1.1
Date: 2024-09-25
Authors@R: c(
    person("Mar", "Vazquez Rabunal", , "mar.vazquez_rabunal@roche.com", role = "aut"),
    person("Daniel", "Sabanés Bové", , "daniel.sabanes_bove@roche.com", role = "aut"),
    person("Marcel", "Wolbers", , "marcel.wolbers@roche.com", role = "aut"),
    person("Isaac", "Gravestock", , "isaac.gravestock@roche.com", role = "cre"),
    person("F. Hoffmann-La Roche AG", role = c("cph", "fnd"))
  )
Description: Subgroup analyses are routinely performed in clinical
        trial analyses. From a methodological perspective, two key
        issues of subgroup analyses are multiplicity (even if only
        predefined subgroups are investigated) and the low sample sizes
        of subgroups which lead to highly variable estimates, see e.g.
        Yusuf et al (1991) <doi:10.1001/jama.1991.03470010097038>. This
        package implements subgroup estimates based on Bayesian
        shrinkage priors, see Carvalho et al (2019)
        <https://proceedings.mlr.press/v5/carvalho09a.html>. In
        addition, estimates based on penalized likelihood inference are
        available, based on Simon et al (2011)
        <doi:10.18637/jss.v039.i05>. The corresponding shrinkage based
        forest plots address the aforementioned issues and can
        complement standard forest plots in practical clinical trial
        analyses.
License: Apache License 2.0
URL: https://github.com/insightsengineering/bonsaiforest/
BugReports: https://github.com/insightsengineering/bonsaiforest/issues
Depends: R (>= 4.1)
Imports: brms (>= 2.22.0), broom, checkmate, dplyr, forcats, gbm,
        ggplot2, glmnet, MASS, Rcpp, splines2, stats, survival, tibble,
        tidyr, tidyselect, vdiffr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
biocViews:
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.2.9000
NeedsCompilation: yes
Packaged: 2026-10-24 06:41:49 UTC; root
Author: Mar Vazquez Rabunal [aut], Daniel Sabanés Bové [aut], Marcel
        Wolbers [aut], Isaac Gravestock [cre], F. Hoffmann-La Roche AG
        [cph, fnd]
Maintainer: Isaac Gravestock <isaac.gravestock@roche.com>
Repository: https://cran.r-universe.dev
Date/Publication: 2024-09-27 12:30:02 UTC
RemoteUrl: https://github.com/cran/bonsaiforest
RemoteRef: HEAD
RemoteSha: ca4e0b4513ecf000be42d860edd7f1d94df77459