Changes in version 1.3 (2017-07-05)                   

CHANGES

    o   Tidied up every function's code, comments, and variable names

    o   Several function parameter names were changed.  The old names remain to support backwards compatibility.

    o   Added as.vector to the ga function -- update this later

    o   Changed pvalue calculations to include +1/+1 so it never is 0

                         Changes in version 1.2                         

CHANGES

    o   Removed the cutoff parameter from all G Star calculations because it must be done at 50% for the math to be correct.

    o   Removed the PBMethod parameter from glrtPvalue 

    o   Change bootstraps to the number of permutations in the glrtPvalue function so it is consistant with the functionality.

    o   Added a function for paired data p-value test pairedPvalue

    o   Added numSims to testGoF for the chi squared test

    o   Added a function to plot the data on an MDS plot

    o   Added a function to plot the data as a heatmap

    o   Added a function to compute a p value using a LRT method

    o   Added a function that uses a genetic algorthim to find differences in groups

                  Changes in version 1.1 (2014-06-24)                   

CHANGES

    o   Made glrtReg and glmReg functions internal since they should only be called from the glrtPvalue function. 

    o   Change the initial clustering in the getGibbsMixture from pam to random sampling.

BUG FIXES

    o   Fixed a bug in getGibbsMixture and getLoglikeMixture where large graphs would cause errors or 0 to return.

    o   Fixed a bug in glrtPvalue where the tau and gstar weren't being computed correctly in some instances.