NEWS
bingat 1.3 (2017-07-05)
CHANGES
- Tidied up every function's code, comments, and variable names
- Several function parameter names were changed. The old names remain to support backwards compatibility.
- Added as.vector to the ga function -- update this later
- Changed pvalue calculations to include +1/+1 so it never is 0
bingat 1.2
CHANGES
- Removed the cutoff parameter from all G Star calculations because it must be done at 50% for the math to be correct.
- Removed the PBMethod parameter from glrtPvalue
- Change bootstraps to the number of permutations in the glrtPvalue function so it is consistant with the functionality.
- Added a function for paired data p-value test pairedPvalue
- Added numSims to testGoF for the chi squared test
- Added a function to plot the data on an MDS plot
- Added a function to plot the data as a heatmap
- Added a function to compute a p value using a LRT method
- Added a function that uses a genetic algorthim to find differences in groups
bingat 1.1 (2014-06-24)
CHANGES
- Made glrtReg and glmReg functions internal since they should only be called from the glrtPvalue function.
- Change the initial clustering in the getGibbsMixture from pam to random sampling.
BUG FIXES
- Fixed a bug in getGibbsMixture and getLoglikeMixture where large graphs would cause errors or 0 to return.
- Fixed a bug in glrtPvalue where the tau and gstar weren't being computed correctly in some instances.