Package: bclogit
Title: Conditional Logistic Regression
Version: 1.1.1
Authors@R: c(
    person("Adam", "Kapelner", email = "kapelner@qc.cuny.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-5985-6792")),
    person("Jacob", "Tennenbaum", email = "Jacob.Tennenbaum51@qmail.cuny.edu", role = c("aut"), comment = c(ORCID = "0009-0006-1408-5035"))
    )
Author: Adam Kapelner [aut, cre] (ORCID:
        <https://orcid.org/0000-0001-5985-6792>), Jacob Tennenbaum
        [aut] (ORCID: <https://orcid.org/0009-0006-1408-5035>)
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Description: Performs inference for Bayesian conditional logistic
        regression with informative priors built from the concordant
        pair data. We include many options to build the priors. And we
        include many options during the inference step for estimation,
        testing and confidence set creation. For details, see Kapelner
        and Tennenbaum (2026) "Improved Conditional Logistic Regression
        using Information in Concordant Pairs with Software"
        <doi:10.48550/arXiv.2602.08212>.
SystemRequirements: GNU make
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1.0), Rcpp (>= 1.0.14)
Imports: checkmate, coda, fastLogisticRegressionWrap, geepack, methods,
        RcppParallel (>= 5.0.1), rstan (>= 2.26.0), rstantools (>=
        2.6.0)
Suggests: testthat (>= 3.0.0), glmmTMB, survival, ggdist, data.table
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.26.0), StanHeaders (>=
        2.26.0)
URL: https://github.com/tennenbaumj/bclogit_package_and_paper_repo
BugReports: https://github.com/tennenbaumj/bclogit_package_and_paper_repo/issues
X-schema.org-keywords: bayesian-statistics,
        conditional-logistic-regression, matched-case-control-studies,
        matched-pairs, concordant-pairs, informative-priors,
        epidemiology, biostatistics, binary-outcomes, stan
Biarch: true
RoxygenNote: 7.3.3
NeedsCompilation: yes
Packaged: 2026-10-31 07:32:21 UTC; root
Config/pak/sysreqs: make
Repository: https://cran.r-universe.dev
Date/Publication: 2026-09-30 22:10:15 UTC
RemoteUrl: https://github.com/cran/bclogit
RemoteRef: HEAD
RemoteSha: a570eb313cd20e05e337a600b673c3a5579ccbaa