# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "baldur" in publications use:'
type: software
license: MIT
title: 'baldur: Bayesian Hierarchical Modeling for Label-Free Proteomics'
version: 0.0.4
doi: 10.1016/j.mcpro.2023.100658
identifiers:
- type: doi
  value: 10.32614/CRAN.package.baldur
abstract: Statistical decision in proteomics data using a hierarchical Bayesian model.
  There are two regression models for describing the mean-variance trend, a gamma
  regression or a latent gamma mixture regression. The regression model is then used
  as an Empirical Bayes estimator for the prior on the variance in a peptide. Further,
  it assumes that each measurement has an uncertainty (increased variance) associated
  with it that is also inferred. Finally, it tries to estimate the posterior distribution
  (by Hamiltonian Monte Carlo) for the differences in means for each peptide in the
  data. Once the posterior is inferred, it integrates the tails to estimate the probability
  of error from which a statistical decision can be made. See Berg and Popescu for
  details (<https://doi.org/10.1016/j.mcpro.2023.100658>).
authors:
- family-names: Berg
  given-names: Philip
  email: pberg@live.se
  orcid: https://orcid.org/0000-0002-3772-6185
preferred-citation:
  type: article
  title: 'Baldur: Bayesian Hierarchical Modeling for Label-Free Proteomics with Gamma
    Regressing Mean-Variance Trends'
  authors:
  - family-names: Berg
    given-names: Philip
    email: pb1015@msstate.edu
    orcid: https://orcid.org/0000-0002-3772-6185
  - family-names: George
    given-names: Popescu
    email: popescu@igbb.msstate.edu
  journal: Molecular & Cellular Proteomics
  year: '2023'
  volume: '22'
  issue: '12'
  doi: 10.1016/j.mcpro.2023.100658
repository: https://cran.r-universe.dev
repository-code: https://github.com/PhilipBerg/baldur
commit: 5ed4970ca839ed4671c3f1ef551450685f6813f1
url: https://github.com/PhilipBerg/baldur
date-released: '2025-11-09'
contact:
- family-names: Berg
  given-names: Philip
  email: pberg@live.se
  orcid: https://orcid.org/0000-0002-3772-6185