NEWS
badp 0.5.0 (2026-05-14)
- Breaking change:
best_models() now takes a character prior argument
in place of the integer criterion argument. Use prior = "binomial"
(default) instead of criterion = 1, and prior = "beta" instead of
criterion = 2. This brings the API in line with summary.badp_bma(),
which already used prior = "binomial" | "beta".
- Breaking change: Renamed
dil.Par parameter to omega for clarity and consistency with statistical literature.
- Added S3 classes and methods for JSS compliance:
bma() now returns an object of class badp_bma (previously unclassed list).
optim_model_space() now returns an object of class badp_model_space.
- Implemented S3 methods for
badp_bma objects:
print.badp_bma() - Clean, informative console output.
summary.badp_bma() - Detailed statistical summary with highlighted important variables. Enhanced to display BMA statistics for both binomial and binomial-beta priors simultaneously.
coef.badp_bma() - Extract coefficients with optional standard errors and PIPs.
plot.badp_bma() - Default visualization with dispatch to existing plot functions.
- Implemented
print.badp_model_space() for model space objects.
- Fixed component names in
bma() output: removed spaces, duplicates, and typos; all names are now valid R identifiers (e.g., uniform_table, random_table, reg_names, dilution, alphas).
- Compatibility note: Numeric indexing (
results[[3]]) and helper functions (best_models(), jointness(), etc.) are fully preserved. Named access is available via the new identifiers (e.g., results$reg_names), but code using the previous long component names must be updated.
- Added comprehensive tests for S3 methods and for preserved numeric-indexing/helper-function compatibility (125 new tests).
- Improved documentation: Added
@keywords internal to hide helper and implementation functions from user-facing help documentation.
- Replaced
sem_likelihood example: use the bundled economic_growth dataset instead of small random data that could produce NA or invalid positive values on some platforms.
- Removed
ggpubr dependency; plotting functions now use patchwork for plot arrangement.
- Added
migration_data dataset with migration flows data from Afonso, Alves, & Beck (2025).
- Added
migration_model_space and migration_model_space_nonnested example model space objects.
- Fixed
feature_standardization function to handle tibble input correctly.
- Exported
join_lagged_col function.
- Standardized internal variable naming to R-idiomatic conventions (e.g.,
n_ prefix for counts, df_free for degrees of freedom).
- Fixed spelling mistakes and grammar in documentation.
badp 0.4.0 (2026-03-11)
- Renamed package from
bdsm to badp (Bayesian Averaging for Dynamic Panels).
- Removed the
df argument from the bma function; data is no longer required at the BMA stage.
- Added
posterior_dens function for plotting posterior densities of coefficients.
- Added weighted coefficient histograms in
coef_hist via the weight parameter (based on posterior model probabilities).
- Exported
extract_names function.
- Recomputed bundled datasets to be consistent with updated
optim_model_space.
badp 0.3.0
- Reimplemented SEM likelihood computation in C++.
badp 0.2.2
- Modified the method for selecting beta coefficient rows in the
bma function for improved robustness and compatibility.
- Updated tests to align with changes in the upcoming ggplot2 release (v4.0.0), ensuring compatibility and future-proofing the package.
badp 0.2.1
- Added a vignette explaining Bayesian model averaging for dynamic panels with weakly exogenous regressors
badp 0.2.0
- Added GitHub Actions Workflows:
- .github/workflows/R-CMD-check-develop.yaml: A workflow for R CMD checks on the develop branch.
- .github/workflows/R-CMD-check-main.yaml: A workflow for R CMD checks across multiple operating systems and R versions on the main branch.
- Updated .Rbuildignore:
- Ignored the .github directory.
- Updated .gitignore:
- Added rules to ignore R-specific temporary files, build outputs, and vignettes.
- Updated DESCRIPTION:
- Added rmarkdown and pbapply to Suggested and Imports, respectively.
- Updated the dependency on R to version >= 3.5.
- Updated NAMESPACE:
- Adjusted function exports to follow naming conventions (e.g., SEM_* functions renamed to sem_*).
- Re-factored R Functions:
- Renamed SEM_* functions to sem_* in multiple files for consistency.
- Removed R/SEM_bma.R:
- The file R/SEM_bma.R was deleted, indicating major re-factoring or deprecation of related functionality.
- Added progress bar for computationally intensive functions
- Changed naming convention and broadened the meaning of a model space.
Now it is a list containing two named elements:
parameters (params) of all considered models
and statistics (stats) computed using these parameters.
This is a much more comprehensible naming convention than the previous one, where only the parameters were considered as the model space.
Along with that change, some re-factoring and modifications were introduced:
- all functions relating to the model space are now stored in R/model_space.R
- initialize_model_space was renamed to init_model_space_params
- likelihoods_summary was renamed to compute_model_space_stats
- optimal_model_space was renamed to optim_model_space_params
- a wrapper function optim_model_space, which returns the entire model space (both parameters and statistics), was introduced
- data objects released with the package were re-factored, recomputed, and renamed. Two example model spaces computed with the new optim_model_space function are provided: small_model_space and full_model_space.
- Simplified the framework for data preparation.
A single function feature_standardization is provided, which allows flexible and simple options for data preparation.
See the vignette and function manual for more details.
badp 0.1.0