{ "_id": "6a1549a5acfb0bcc41d5879b", "Package": "vistla", "Title": "Detecting Influence Paths with Information Theory", "Version": "2.1.2", "Authors@R": "c(\nperson(\nc(\"Miron\",\"B.\"),\"Kursa\",\nrole=c(\"aut\",\"cre\"),\nemail=\"m@mbq.me\",\ncomment=c(ORCID=\"0000-0001-7672-648X\")\n)\n)", "Description": "Traces information spread through interactions between\nfeatures, utilising information theory measures and a\nhigher-order generalisation of the concept of widest paths in\ngraphs. In particular, 'vistla' can be used to better\nunderstand the results of high-throughput biomedical\nexperiments, by organising the effects of the investigated\nintervention in a tree-like hierarchy from direct to indirect\nones, following the plausible information relay circuits. Due\nto its higher-order nature, 'vistla' can handle multi-modality\nand assign multiple roles to a single feature.", "License": "GPL (>= 3)", "BugReports": "https://gitlab.com/mbq/vistla/-/issues", "URL": "https://gitlab.com/mbq/vistla", "Language": "en-GB", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.1", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-26 07:17:31 UTC", "User": "root" }, "Author": "Miron B. Kursa [aut, cre] (ORCID:\n)", "Maintainer": "Miron B. Kursa ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-11-27 11:10:02 UTC", "RemoteUrl": "https://github.com/cran/vistla", "RemoteRef": "HEAD", "RemoteSha": "716307b0df6353aac9caee130c2330c1f010fb32", "MD5sum": "718e2631d6567e237186ccb0ffa87220", "_user": "cran", "_type": "src", "_file": "vistla_2.1.2.tar.gz", "_fileid": "4c6ae9eaf720596e624db3eb061212ec2a7b90826511f7dbb366e903430a63f4", "_filesize": 381184, "_sha256": "4c6ae9eaf720596e624db3eb061212ec2a7b90826511f7dbb366e903430a63f4", "_created": "2026-05-26T07:17:31.000Z", "_published": "2026-05-26T07:20:05.423Z", "_distro": "noble", "_jobs": [ { "job": 77825740250, "time": 116, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7211075606" }, { "job": 77825740249, "time": 98, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7211071092" }, { "job": 77825740234, "time": 105, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7211072728" }, { "job": 77825740244, "time": 90, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7211068763" }, { "job": 77825412047, "time": 141, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7211043288" }, { "job": 77825740217, "time": 85, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7211067350" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26437911969", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/vistla", "_commit": { "id": "716307b0df6353aac9caee130c2330c1f010fb32", "author": "Miron B. Kursa ", "committer": "cran-robot ", "message": "version 2.1.2\n", "time": 1764241802 }, "_maintainer": { "name": "Miron B. Kursa", "email": "m@mbq.me", "orcid": "0000-0001-7672-648X" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "grid", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-48", "n": 1 } ], "_tags": [ { "name": "2.1.2", "date": "2025-11-27" } ], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 674, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/vistla" }, "_devurl": "https://gitlab.com/mbq/vistla", "_searchresults": 3, "_topics": [ "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/vistla.html", "manual.pdf" ], "_homeurl": "https://gitlab.com/mbq/vistla", "_realowner": "mbq", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2022-08-18" }, { "version": "1.0.1", "date": "2022-11-24" }, { "version": "1.1.0", "date": "2023-07-07" }, { "version": "2.0.0", "date": "2023-10-05" }, { "version": "2.0.1", "date": "2023-12-14" }, { "version": "2.0.2", "date": "2024-06-06" }, { "version": "2.0.3", "date": "2024-09-27" }, { "version": "2.0.4", "date": "2025-01-26" }, { "version": "2.1.0", "date": "2025-02-06" }, { "version": "2.1.1", "date": "2025-02-19" }, { "version": "2.1.2", "date": "2025-11-27" } ], "_exports": [ "branches", "collapse", "ensemble", "flow", "hierarchy", "mi_scores", "mle_coerce", "path_to", "paths", "prune", "vistla", "write.dot" ], "_datasets": [ { "name": "cchain", "title": "Synthetic continuous data representing a simple mediator chain", "object": "cchain", "class": [ "data.frame" ], "fields": [ "Y", "M1", "M2", "M3", "M4", "T" ], "rows": 20, "table": true, "tojson": true }, { "name": "chain", "title": "Synthetic data representing a simple mediator chain", "object": "chain", "class": [ "data.frame" ], "fields": [ "Y", "M1", "M2", "M3", "M4", "T" ], "rows": 11, "table": true, "tojson": true }, { "name": "junction", "title": "Synthetic data representing a junction", "object": "junction", "class": [ "data.frame" ], "fields": [ "Y", "J", "A1", "A2", "A3", "B1", "B2", "B3" ], "rows": 50, "table": true, "tojson": true } ], "_help": [ { "page": "branches", "title": "Extract all branches of the Vistla tree", "topics": [ "as.data.frame.vistla", "branches" ] }, { "page": "cchain", "title": "Synthetic continuous data representing a simple mediator chain", "topics": [ "cchain" ] }, { "page": "chain", "title": "Synthetic data representing a simple mediator chain", "topics": [ "chain" ] }, { "page": "collapse", "title": "Collapse the vistla tree into a pairwise graph", "topics": [ "collapse" ] }, { "page": "ensemble", "title": "Construct the value for the ensemble argument", "topics": [ "ensemble", "print.vistla_ensemble_control" ] }, { "page": "flow", "title": "Construct the value for the flow argument", "topics": [ "flow", "print.vistla_flow" ] }, { "page": "hierarchy", "title": "Extract the vertex hierarchy from the vistla tree", "topics": [ "hierarchy" ] }, { "page": "junction", "title": "Synthetic data representing a junction", "topics": [ "junction" ] }, { "page": "mi_scores", "title": "Extract mutual information score matrix", "topics": [ "mi_scores" ] }, { "page": "mle_coerce", "title": "Basic discretisation of numerical features", "topics": [ "mle_coerce" ] }, { "page": "path_to", "title": "Extract a single path", "topics": [ "path_to" ] }, { "page": "paths", "title": "List all paths", "topics": [ "paths" ] }, { "page": "plot.vistla", "title": "Overview plot of the vistla tree", "topics": [ "plot.vistla", "plot.vistla_plot", "print.vistla_plot" ] }, { "page": "print.vistla", "title": "Print vistla objects", "topics": [ "print.vistla", "print.vistla_hierarchy" ] }, { "page": "prune", "title": "Prune the vistla tree", "topics": [ "prune" ] }, { "page": "vistla", "title": "Influence path identification with the Vistla algorithm", "topics": [ "vistla", "vistla.data.frame", "vistla.default", "vistla.formula" ] }, { "page": "write.dot", "title": "Export tree to a Graphviz DOT format", "topics": [ "write.dot" ] } ], "_rundeps": [], "_sysdeps": [ { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_vignettes": [ { "source": "walkthrough.Rnw", "filename": "walkthrough.pdf", "title": "Vistla walkthrough", "engine": "utils::Sweave", "headings": [], "created": "2025-02-06 15:10:02", "modified": "2025-02-19 23:40:02", "commits": 2 } ], "_score": 2, "_indexed": false, "_nocasepkg": "vistla", "_universes": [ "cran" ], "_indexurl": "https://mbq.r-universe.dev/vistla", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.1.2", "date": "2026-05-26T07:19:39.000Z", "distro": "noble", "arch": "aarch64", "commit": "716307b0df6353aac9caee130c2330c1f010fb32", "fileid": "7ea5d31c26d137e814d55aba27ab47037af73b3157d74aa55296a40a4b5eee6c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26437911969" }, { "r": "4.7.0", "os": "linux", "version": "2.1.2", "date": "2026-05-26T07:19:19.000Z", "distro": "noble", "arch": "x86_64", "commit": "716307b0df6353aac9caee130c2330c1f010fb32", "fileid": "36f44c5baefd9761d7189a262ff3feee13b22132a0ec50a84ad8c939bcfdd0d3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26437911969" }, { "r": "4.6.0", "os": "linux", "version": "2.1.2", "date": "2026-05-26T07:19:28.000Z", "distro": "noble", "arch": "aarch64", "commit": "716307b0df6353aac9caee130c2330c1f010fb32", "fileid": "1e21421cfd2b94bd72d525305c3d58588554f7bb53a763f6ee04bf3ad83b3739", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26437911969" }, { "r": "4.6.0", "os": "linux", "version": "2.1.2", "date": "2026-05-26T07:19:10.000Z", "distro": "noble", "arch": "x86_64", "commit": "716307b0df6353aac9caee130c2330c1f010fb32", "fileid": "e2372c6c99da4c09aa27201e4fd30e228d1fc6902f0100d8c9b9ab50daf03f9a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26437911969" }, { "r": "4.6.0", "os": "wasm", "version": "2.1.2", "date": "2026-05-26T07:19:18.000Z", "arch": "emscripten", "commit": "716307b0df6353aac9caee130c2330c1f010fb32", "fileid": "9eca909d1e5fbe7fb0d8830d6998148f4a9b555a70522e5fa3dd04ea0164fa92", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26437911969" } ] }