{ "_id": "6ae31cc23d0f299392dd0d5b", "Package": "survstan", "Title": "Fitting Survival Regression Models via 'Stan'", "Version": "0.0.7.1", "Authors@R": "c(\nperson(given = \"Fabio\", family = \"Demarqui\", role = c(\"aut\", \"cre\", \"cph\"), email = \"fndemarqui@est.ufmg.br\", comment = c(ORCID = \"0000-0001-9236-1986\")),\nperson(given = \"Andrew\", family = \"Johnson\", role = \"ctb\")\n)", "Description": "Parametric survival regression models under the maximum\nlikelihood approach via 'Stan'. Implemented regression models\ninclude accelerated failure time models, proportional hazards\nmodels, proportional odds models, accelerated hazard models,\nYang and Prentice models, and extended hazard models. Available\nbaseline survival distributions include exponential, Weibull,\nlog-normal, log-logistic, gamma, generalized gamma, rayleigh,\nGompertz and fatigue (Birnbaum-Saunders) distributions.\nReferences: Lawless (2002) ; Bennett (1982)\n; Chen and Wang(2000)\n; Demarqui and Mayrink\n(2021) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.3.1", "Biarch": "true", "RdMacros": "Rdpack", "SystemRequirements": "GNU make", "URL": "https://github.com/fndemarqui/survstan,\nhttps://fndemarqui.github.io/survstan/", "BugReports": "https://github.com/fndemarqui/survstan/issues", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-29 10:07:21 UTC", "User": "root" }, "Author": "Fabio Demarqui [aut, cre, cph]\n(), Andrew Johnson [ctb]", "Maintainer": "Fabio Demarqui ", "Config/pak/sysreqs": "make", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2024-04-13 02:29:08 UTC", "RemoteUrl": "https://github.com/cran/survstan", "RemoteRef": "HEAD", "RemoteSha": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "_user": "cran", "_type": "src", "_file": "survstan_0.0.7.1.tar.gz", "_fileid": "https://r2.ropensci.org/93478b6c5b24b42b62f9ea6fd924a641811dcf502c39554df21d0f458e7eb69b", "_filesize": 441434, "_sha256": "93478b6c5b24b42b62f9ea6fd924a641811dcf502c39554df21d0f458e7eb69b", "_expires": "2027-02-06T10:15:28.000Z", "_created": "2026-10-29T10:07:21.000Z", "_published": "2026-10-29T10:15:30.293Z", "_upstream": "https://github.com/cran/survstan", "_status": "success", "_maintainer": { "name": "Fabio Demarqui", "email": "fndemarqui@est.ufmg.br", "login": "fndemarqui", "orcid": "0000-0001-9236-1986", "description": "", "uuid": 30907827 }, "_jobs": [ { "job": 123384452683, "time": 240, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "12888664413" }, { "job": 123384452534, "time": 245, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12889695208" }, { "job": 123384452559, "time": 243, "config": "linux-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12888274939" }, { "job": 123384452599, "time": 260, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12888907442" }, { "job": 123381483011, "time": 393, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12888369054" }, { "job": 123384452516, "time": 205, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12889401250" }, { "job": 123384452897, "time": 344, "config": "windows-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "12888907652" }, { "job": 123384452581, "time": 366, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12889466103" }, { "job": 123384452713, "time": 345, "config": "windows-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12889625742" }, { "job": 123384452545, "time": 309, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12889815394" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985", "_commit": { "id": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "author": "Fabio Demarqui ", "committer": "cran-robot ", "message": "version 0.0.7.1\n", "time": 1712975348 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.0", "role": "Depends" }, { "package": "survival", "role": "Depends" }, { "package": "BH", "version": ">= 1.66.0", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 0.12.0", "role": "LinkingTo" }, { "package": "RcppEigen", "version": ">= 0.3.3.3.0", "role": "LinkingTo" }, { "package": "RcppParallel", "version": ">= 5.0.1", "role": "LinkingTo" }, { "package": "rstan", "version": ">= 2.26.0", "role": "LinkingTo" }, { "package": "StanHeaders", "version": ">= 2.26.0", "role": "LinkingTo" }, { "package": "actuar", "version": ">= 3.0.0", "role": "Imports" }, { "package": "broom", "role": "Imports" }, { "package": "doFuture", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "extraDistr", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "future", "role": "Imports" }, { "package": "generics", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "Rcpp", "version": ">= 0.12.0", "role": "Imports" }, { "package": "RcppParallel", "version": ">= 5.0.1", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "rstan", "version": ">= 2.26.0", "role": "Imports" }, { "package": "rstantools", "version": ">= 2.3.1", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "emmeans", "version": ">= 1.4.2", "role": "Suggests" }, { "package": "estimability", "role": "Suggests" }, { "package": "GGally", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "fndemarqui", "count": 9, "uuid": 30907827 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 634, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 399, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/survstan" }, "_devurl": "https://github.com/fndemarqui/survstan", "_pkgdown": "https://fndemarqui.github.io/survstan/", "_searchresults": 104, "_topics": [ "onetbb", "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/survstan.html", "LICENSE" ], "_homeurl": "https://github.com/fndemarqui/survstan", "_realowner": "fndemarqui", "_cranurl": false, "_releases": [ { "version": "0.0.1", "date": "2023-05-04" }, { "version": "0.0.2", "date": "2023-06-09" }, { "version": "0.0.3", "date": "2023-08-09" }, { "version": "0.0.4", "date": "2023-09-21" }, { "version": "0.0.5", "date": "2023-12-18" }, { "version": "0.0.6", "date": "2024-01-18" }, { "version": "0.0.6.1", "date": "2024-02-05" }, { "version": "0.0.7", "date": "2024-03-20" }, { "version": "0.0.7.1", "date": "2024-04-12" } ], "_exports": [ "aftreg", "ahreg", "cross_time", "dggprentice", "dggstacy", "dgompertz", "ehreg", "estimates", "ggresiduals", "pggprentice", "pggstacy", "pgompertz", "phreg", "poreg", "qggprentice", "qggstacy", "qgompertz", "rank_models", "rggprentice", "rggstacy", "rgompertz", "se", "tidy", "ypreg" ], "_datasets": [ { "name": "gastric", "title": "Gastric cancer data set", "object": "gastric", "file": "gastric.rda", "class": [ "data.frame" ], "fields": [ "time", "status", "trt" ], "rows": 90, "table": true, "tojson": true }, { "name": "ipass", "title": "IRESSA Pan-Asia Study (IPASS) data set", "object": "ipass", "file": "ipass.rda", "class": [ "data.frame" ], "fields": [ "time", "status", "arm" ], "rows": 1217, "table": true, "tojson": true } ], "_help": [ { "page": "survstan-package", "title": "The 'survstan' package.", "topics": [ "survstan-package", "survstan" ] }, { "page": "aftreg", "title": "Fitting Accelerated Failure Time Models", "topics": [ "aftreg" ] }, { "page": "ahreg", "title": "Fitting Accelerated Hazard Models", "topics": [ "ahreg" ] }, { "page": "AIC.survstan", "title": "Akaike information criterion", "topics": [ "AIC.survstan" ] }, { "page": "anova.survstan", "title": "anova method for survstan models", "topics": [ "anova.survstan" ] }, { "page": "coef.survstan", "title": "Estimated regression coefficients", "topics": [ "coef.survstan" ] }, { "page": "confint.survstan", "title": "Confidence intervals for the regression coefficients", "topics": [ "confint.survstan" ] }, { "page": "cross_time", "title": "Generic S3 method cross_time", "topics": [ "cross_time" ] }, { "page": "cross_time-methods", "title": "Computes the crossing survival times", "topics": [ "cross_time.survstan" ] }, { "page": "ehreg", "title": "Fitting Extended Hazard Models", "topics": [ "ehreg" ] }, { "page": "emmeans-survstan-helpers", "title": "Support Functions for 'emmeans'", "topics": [ "emmeans-survstan-helpers", "recover_data.ehreg", "recover_data.survstan", "recover_data.ypreg" ] }, { "page": "estimates", "title": "Parameters estimates of a survstan model", "topics": [ "estimates" ] }, { "page": "extractAIC.survstan", "title": "Extract AIC from a Fitted Model", "topics": [ "extractAIC.survstan" ] }, { "page": "gastric", "title": "Gastric cancer data set", "topics": [ "gastric" ] }, { "page": "ggprentice", "title": "The Generalized Gamma Distribution (Prentice's alternative parametrization)", "concept": [ "Continuous", "Univariate" ], "topics": [ "dggprentice", "ggprentice", "pggprentice", "qggprentice", "rggprentice" ] }, { "page": "ggresiduals", "title": "Generic S3 method ggresiduals", "topics": [ "ggresiduals" ] }, { "page": "ggresiduals.survstan", "title": "ggresiduals method for survstan models", "topics": [ "ggresiduals.survstan" ] }, { "page": "ggstacy", "title": "The Generalized Gamma Distribution (Stacy's original parametrization)", "concept": [ "Continuous", "Univariate" ], "topics": [ "dggstacy", "ggstacy", "pggstacy", "qggstacy", "rggstacy" ] }, { "page": "Gompertz", "title": "The Gompertz Distribution", "concept": [ "Continuous", "Univariate" ], "topics": [ "dgompertz", "Gompertz", "gompertz", "Hgompertz", "hgompertz", "pgompertz", "qgompertz", "rgompertz" ] }, { "page": "ipass", "title": "IRESSA Pan-Asia Study (IPASS) data set", "topics": [ "ipass" ] }, { "page": "logLik.survstan", "title": "Extract Log-Likelihood from a Fitted Model", "topics": [ "logLik.survstan" ] }, { "page": "model.matrix.survstan", "title": "Model.matrix method for survstan models", "topics": [ "model.matrix.survstan" ] }, { "page": "phreg", "title": "Fitting Proportional Hazards Models", "topics": [ "phreg" ] }, { "page": "poreg", "title": "Fitting Proportional Odds Models", "topics": [ "poreg" ] }, { "page": "print.summary.survstan", "title": "Print the summary.survstan output", "topics": [ "print.summary.survstan" ] }, { "page": "rank_models", "title": "Rank a collection of survstan models", "topics": [ "rank_models" ] }, { "page": "residuals.survstan", "title": "residuals method for survstan models", "topics": [ "residuals.survstan" ] }, { "page": "se", "title": "Generic S3 method se", "topics": [ "se" ] }, { "page": "se.survstan", "title": "Estimated standard errors", "topics": [ "se.survstan" ] }, { "page": "summary.survstan", "title": "Summary for a survstan object", "topics": [ "summary.survstan" ] }, { "page": "survfit.survstan", "title": "survfit method for survstan models", "topics": [ "survfit.survstan" ] }, { "page": "tidy.survstan", "title": "Tidy a survstan object", "topics": [ "tidy.survstan" ] }, { "page": "vcov.survstan", "title": "Variance-covariance matrix", "topics": [ "vcov.survstan" ] }, { "page": "ypreg", "title": "Fitting Yang and Prentice Models", "topics": [ "ypreg" ] } ], "_pkglogo": "https://github.com/cran/survstan/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/cran/survstan/raw/HEAD/README.md", "_rundeps": [ "abind", "actuar", "backports", "BH", "broom", "callr", "checkmate", "cli", "codetools", "cpp11", "desc", "digest", "distributional", "doFuture", "dplyr", "expint", "extraDistr", "farver", "foreach", "future", "future.apply", "generics", "ggplot2", "globals", "glue", "gridExtra", "gtable", "inline", "isoband", "iterators", "labeling", "lattice", "lifecycle", "listenv", "loo", "magrittr", "MASS", "Matrix", "matrixStats", "numDeriv", "otel", "parallelly", "pillar", "pkgbuild", "pkgconfig", "posterior", "processx", "ps", "purrr", "QuickJSR", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppParallel", "Rdpack", "rlang", "rstan", "rstantools", "S7", "scales", "StanHeaders", "stringi", "stringr", "survival", "tensorA", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "libtbb", "package": "libtbb12", "headers": "libtbb-dev", "source": "onetbb", "version": "2022.3.0-2", "name": "onetbb", "homepage": "https://uxlfoundation.github.io/oneTBB/", "description": "parallelism library for C++ - runtime files" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "survstan.Rmd", "filename": "survstan.html", "title": "Introduction to the R package survstan", "engine": "knitr::rmarkdown", "headings": [], "created": "2023-05-04 18:10:02", "modified": "2024-03-21 02:34:10", "commits": 5 }, { "source": "LRT.Rmd", "filename": "LRT.html", "title": "Likelihood ratio tests with the survstan package", "engine": "knitr::rmarkdown", "headings": [ "Ipass data" ], "created": "2023-08-10 01:46:35", "modified": "2024-03-21 02:34:10", "commits": 3 } ], "_score": 4.017033339298781, "_indexed": false, "_nocasepkg": "survstan", "_universes": [ "cran" ], "_indexurl": "https://fndemarqui.r-universe.dev/survstan", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.7.1", "date": "2026-10-29T10:10:56.000Z", "distro": "resolute", "arch": "aarch64", "commit": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "fileid": "https://r2.ropensci.org/72c3b2176feab06b83388951a8a80e01a472990765d5523a04255835c5b2a9aa", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985" }, { "r": "4.7.0", "os": "linux", "version": "0.0.7.1", "date": "2026-10-29T10:11:11.000Z", "distro": "resolute", "arch": "x86_64", "commit": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "fileid": "https://r2.ropensci.org/d0c9bc0b98af00221cb557eb1b717806d714b04e3dd7e4157ba7af4d0d07dbc9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985" }, { "r": "4.6.1", "os": "linux", "version": "0.0.7.1", "date": "2026-10-29T10:10:57.000Z", "distro": "resolute", "arch": "aarch64", "commit": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "fileid": "https://r2.ropensci.org/7071c814d6903b8648d7970ae2b982355ee1de9c61966426f82f58d18fa7fc65", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985" }, { "r": "4.6.1", "os": "linux", "version": "0.0.7.1", "date": "2026-10-29T10:11:16.000Z", "distro": "resolute", "arch": "x86_64", "commit": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "fileid": "https://r2.ropensci.org/5046851e8722eb95ddc6d214569fff5eb27df06e268a8df057d4fc5cda8feff4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.7.1", "date": "2026-10-29T10:11:29.000Z", "arch": "emscripten", "commit": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "fileid": "https://r2.ropensci.org/d3f9fca30fe62bcf1d9c7727c23e473dfc4b28a4f7bb87e6a0c067ea791c0f76", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985" }, { "r": "4.7.0", "os": "win", "version": "0.0.7.1", "date": "2026-10-29T10:12:16.000Z", "arch": "aarch64", "commit": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "fileid": "https://r2.ropensci.org/43f3074aa878b7fcedd00ffaa92fd2659e7d28e5c7a0d4a53d545726e4639dd5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985" }, { "r": "4.7.0", "os": "win", "version": "0.0.7.1", "date": "2026-10-29T10:10:42.000Z", "arch": "x86_64", "commit": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "fileid": "https://r2.ropensci.org/4f907fcd7cd3492ddff8587cdbce70ae2ce4d68818d9b9ebe1888be2fe70ff71", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985" }, { "r": "4.6.1", "os": "win", "version": "0.0.7.1", "date": "2026-10-29T10:12:26.000Z", "arch": "aarch64", "commit": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "fileid": "https://r2.ropensci.org/7aac3404449227870de187645c90855a27d99aa7d2a766653ef058b1a5a2741a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985" }, { "r": "4.6.1", "os": "win", "version": "0.0.7.1", "date": "2026-10-29T10:10:28.000Z", "arch": "x86_64", "commit": "7c5aed0da4e22213fda1c9c45741841ea0cc31c0", "fileid": "https://r2.ropensci.org/ba6fa3c753922afc89de3e474615a3baec90a06956307678d33281d786767fdb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40854267985" } ] }