{ "_id": "6ad9f299dd3792e7732383d2", "Package": "survrec", "Type": "Package", "Version": "2.0.0", "Date": "2026-09-12", "Title": "Survival Analysis for Recurrent Event Data", "Authors@R": "c(\nperson(given = \"Dolors\",\nfamily = \"Pelegri-Siso\",\nemail = \"dolors.pelegri@isglobal.org\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-5993-3003\")),\nperson(\"Juan R.\", \"González\", role = \"aut\",\nemail = \"juanr.gonzalez@isglobal.org\"),\nperson(\"Edsel A.\", \"Peña\", role = \"aut\"),\nperson(\"Robert L.\", \"Strawderman\", role = \"aut\"))", "Description": "Estimation of the survival function of inter-occurrence\ntimes for recurrent event data, using the estimators of Peña,\nStrawderman and Hollander (2001)\n and Wang and Chang (1999)\n, and maximum likelihood\nestimation under a gamma frailty model. Includes bootstrap\ncomparison of survival quantiles between groups.", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "License": "GPL (>= 2)", "URL": "https://github.com/isglobal-brge/survrec", "BugReports": "https://github.com/isglobal-brge/survrec/issues", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-22 11:20:21 UTC", "User": "root" }, "Author": "Dolors Pelegri-Siso [aut, cre] (ORCID:\n), Juan R. González\n[aut], Edsel A. Peña [aut], Robert L. Strawderman [aut]", "Maintainer": "Dolors Pelegri-Siso ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-09-22 07:00:02 UTC", "RemoteUrl": "https://github.com/cran/survrec", "RemoteRef": "HEAD", "RemoteSha": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "_user": "cran", "_type": "src", "_file": "survrec_2.0.0.tar.gz", "_fileid": "https://r2.ropensci.org/24bf2a5f3225f186467f5f54dcadf9b8128607e2795f34da066b1378247526f5", "_filesize": 659937, "_sha256": "24bf2a5f3225f186467f5f54dcadf9b8128607e2795f34da066b1378247526f5", "_expires": "2027-01-30T11:25:11.000Z", "_created": "2026-10-22T11:20:21.000Z", "_published": "2026-10-22T11:25:13.789Z", "_upstream": "https://github.com/cran/survrec", "_status": "success", "_maintainer": { "name": "Dolors Pelegri-Siso", "email": "dolors.pelegri@isglobal.org", "login": "isglobal-exposomehub", "description": "", "uuid": 79249071, "orcid": "0000-0002-5993-3003" }, "_jobs": [ { "job": 119794451209, "time": 116, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "12420909261" }, { "job": 119794451325, "time": 139, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12422266038" }, { "job": 119794451283, "time": 112, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12422530020" }, { "job": 119794451306, "time": 177, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12421712831" }, { "job": 119792898011, "time": 220, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12422320591" }, { "job": 119794451246, "time": 104, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12421757552" }, { "job": 119794451190, "time": 242, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "12422351502" }, { "job": 119794451600, "time": 171, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12422540171" }, { "job": 119794451267, "time": 220, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12422336159" }, { "job": 119794451403, "time": 125, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12422520131" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286", "_commit": { "id": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "author": "Dolors Pelegri-Siso ", "committer": "cran-robot ", "message": "version 2.0.0\n", "time": 1790060402 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "Rcpp", "role": "Imports" }, { "package": "boot", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-39", "n": 1 } ], "_tags": [ { "name": "2.0.0", "date": "2026-09-22" } ], "_stars": 0, "_contributors": [ { "user": "isglobal-exposomehub", "count": 1, "uuid": 79249071 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 634, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 623, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/survrec" }, "_devurl": "https://github.com/isglobal-brge/survrec", "_searchresults": 11, "_topics": [ "cpp", "openmp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/survrec.html" ], "_homeurl": "https://github.com/isglobal-brge/survrec", "_realowner": "isglobal-brge", "_cranurl": false, "_releases": [ { "version": "1.0-2", "date": "2002-10-28" }, { "version": "1.0-3", "date": "2002-11-27" }, { "version": "1.0-4", "date": "2003-04-16" }, { "version": "1.1-1", "date": "2003-11-12" }, { "version": "1.1-2", "date": "2004-12-10" }, { "version": "1.1-3", "date": "2005-05-11" }, { "version": "1.1-4", "date": "2005-11-18" }, { "version": "1.1-5", "date": "2006-04-19" }, { "version": "1.1-6", "date": "2009-02-06" }, { "version": "1.1-7", "date": "2009-02-06" }, { "version": "1.2-2", "date": "2013-12-13" }, { "version": "2.0.0", "date": "2026-09-22" } ], "_exports": [ "autoplot", "is.Survr", "mcf", "mlefrailty_fit", "mlefrailty.fit", "plotEstimators", "psh_fit", "psh.fit", "q_search", "q.search", "surv_search", "surv.search", "survdiffr", "survfitr", "Survr", "survrecThreads", "theme_survrec", "wc_fit", "wc.fit" ], "_datasets": [ { "name": "colon", "title": "Rehospitalization in colorectal cancer", "object": "colon", "class": [ "data.frame" ], "fields": [ "hc", "time", "event", "chemoter", "dukes", "distance" ], "rows": 861, "table": true, "tojson": true }, { "name": "MMC", "title": "Migratory Motor Complex", "object": "MMC", "class": [ "data.frame" ], "fields": [ "id", "time", "event", "group" ], "rows": 99, "table": true, "tojson": true } ], "_help": [ { "page": "survrec-package", "title": "survrec: Survival Analysis for Recurrent Event Data", "topics": [ "survrec-package", "survrec" ] }, { "page": "as.data.frame.survfitr", "title": "Coerce a survfitr object to a data frame", "topics": [ "as.data.frame.survfitr" ] }, { "page": "autoplot.mcf", "title": "Plot a mean cumulative function", "topics": [ "autoplot.mcf" ] }, { "page": "autoplot.survdiffr", "title": "Plot the bootstrap distributions of survival quantiles", "topics": [ "autoplot.survdiffr" ] }, { "page": "autoplot.survfitr", "title": "Plot survival curves with ggplot2", "topics": [ "autoplot.survfitr" ] }, { "page": "colon", "title": "Rehospitalization in colorectal cancer", "topics": [ "colon" ] }, { "page": "mcf", "title": "Mean cumulative function of recurrent event data", "topics": [ "mcf", "print.mcf" ] }, { "page": "mlefrailty_fit", "title": "Survival estimator under a gamma frailty model", "topics": [ "mlefrailty_fit" ] }, { "page": "MMC", "title": "Migratory Motor Complex", "topics": [ "MMC" ] }, { "page": "plot.survfitr", "title": "Plot survival curves of recurrent event data", "topics": [ "lines.survfitr", "plot.survfitr" ] }, { "page": "plotEstimators", "title": "Compare the three survival estimators on the same data", "topics": [ "plotEstimators" ] }, { "page": "print.survfitr", "title": "Print a short summary of survival curves for recurrent event data", "topics": [ "print.survfitr" ] }, { "page": "psh_fit", "title": "Peña-Strawderman-Hollander survival estimator", "topics": [ "psh_fit" ] }, { "page": "q_search", "title": "Survival time of a selected quantile", "topics": [ "q_search" ] }, { "page": "quantile.survfitr", "title": "Quantiles of the survival time", "topics": [ "quantile.survfitr" ] }, { "page": "summary.survdiffr", "title": "Summarize a grouped bootstrap of survival quantiles", "topics": [ "print.summary.survdiffr", "summary.survdiffr" ] }, { "page": "summary.survfitr", "title": "Summary of survival curves for recurrent event data", "topics": [ "print.summary.survfitr", "summary.survfitr" ] }, { "page": "surv_search", "title": "Survival estimate at selected times", "topics": [ "surv_search" ] }, { "page": "survdiffr", "title": "Bootstrap survival quantiles for recurrent event data", "topics": [ "survdiffr" ] }, { "page": "survfitr", "title": "Survival curves for recurrent event data", "topics": [ "survfitr" ] }, { "page": "Survr", "title": "Create a survival recurrent object", "topics": [ "is.Survr", "Survr" ] }, { "page": "survrecThreads", "title": "Number of threads used by survrec", "topics": [ "survrecThreads" ] }, { "page": "theme_survrec", "title": "Plot theme used by the survrec graphics", "topics": [ "theme_survrec" ] }, { "page": "wc_fit", "title": "Wang-Chang survival estimator", "topics": [ "wc_fit" ] } ], "_readme": "https://github.com/cran/survrec/raw/HEAD/README.md", "_rundeps": [ "boot", "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "R6", "RColorBrewer", "Rcpp", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_vignettes": [ { "source": "survrec.Rmd", "filename": "survrec.html", "title": "survrec: survival analysis for recurrent event data", "author": "Institute for Global Health (ISGlobal), Barcelona, Spain Bioinformatics Research Group in Epidemiology (BRGE) https://brge.isglobal.org", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "The data", "Estimating the survival of the gap times", "Comparing the three estimators", "Groups and covariates", "Comparing survival quantiles between groups", "Session information", "References" ], "created": "2026-09-22 07:00:02", "modified": "2026-09-22 07:00:02", "commits": 1 } ], "_score": 2.740362689494244, "_indexed": false, "_nocasepkg": "survrec", "_universes": [ "cran" ], "_indexurl": "https://isglobal-brge.r-universe.dev/survrec", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.0", "date": "2026-10-22T11:22:13.000Z", "distro": "resolute", "arch": "aarch64", "commit": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "fileid": "https://r2.ropensci.org/6543c51c759492745a13edd3fea485aa1f639b6600f1df8908c42d3b46aad4bb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286" }, { "r": "4.7.0", "os": "linux", "version": "2.0.0", "date": "2026-10-22T11:22:24.000Z", "distro": "resolute", "arch": "x86_64", "commit": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "fileid": "https://r2.ropensci.org/44e9819d6300940cefa035c0fcb97198e009f59ebc0fa23538943dba028f4c98", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286" }, { "r": "4.6.1", "os": "linux", "version": "2.0.0", "date": "2026-10-22T11:22:13.000Z", "distro": "resolute", "arch": "aarch64", "commit": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "fileid": "https://r2.ropensci.org/c91a1941507a4bedaca81a2084759ec2c4a1d43759f70aff59b9a3a13779fda1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286" }, { "r": "4.6.1", "os": "linux", "version": "2.0.0", "date": "2026-10-22T11:23:03.000Z", "distro": "resolute", "arch": "x86_64", "commit": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "fileid": "https://r2.ropensci.org/c264f52ab4ae2f25b5c2343a528520b3c7ac7dcfb7e0d9227b4765a37fddd2c4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.0", "date": "2026-10-22T11:22:24.000Z", "arch": "emscripten", "commit": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "fileid": "https://r2.ropensci.org/86684ecfd5d0d6098a47285effc60f602bf7478d6e62482ef4e138aed0195081", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286" }, { "r": "4.7.0", "os": "win", "version": "2.0.0", "date": "2026-10-22T11:23:50.000Z", "arch": "aarch64", "commit": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "fileid": "https://r2.ropensci.org/cbbc2996c9922a69ffebc80939b55222553e4b0140b0feee3868c8d0a83adf4f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286" }, { "r": "4.7.0", "os": "win", "version": "2.0.0", "date": "2026-10-22T11:21:46.000Z", "arch": "x86_64", "commit": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "fileid": "https://r2.ropensci.org/d6986e9aca9ffb032b0509c8a4c1d01fe41ad505cbbb85127188c5a19aaa8123", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286" }, { "r": "4.6.1", "os": "win", "version": "2.0.0", "date": "2026-10-22T11:23:38.000Z", "arch": "aarch64", "commit": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "fileid": "https://r2.ropensci.org/3bb63177cf64a90312e0a85355b79e4d59f663fc8a2f08371ccfb8bb50e7c6f6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286" }, { "r": "4.6.1", "os": "win", "version": "2.0.0", "date": "2026-10-22T11:21:50.000Z", "arch": "x86_64", "commit": "46d5aef2fb994af869bd9a0cbab26bda22804acf", "fileid": "https://r2.ropensci.org/ff586a9607c29463eceaeeacfc2aaee7201ba8bf842c03432b3f82b08a569a10", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/39769360286" } ] }