{
  "_id": "6ae071224d02104fb3ec0708",
  "Package": "splmm",
  "Type": "Package",
  "Title": "Simultaneous Penalized Linear Mixed Effects Models",
  "Version": "1.2.0",
  "Date": "2024-06-12",
  "Authors@R": "c(person(given = \"Luoying\", family = \"Yang\",\nrole = c(\"aut\"),\nemail = \"lyang19@u.rochester.edu\"),\nperson(given = \"Eli\", family = \"Sun\",\nrole = c(\"aut\", \"cre\"),\nemail = \"eli_sun@urmc.rochester.edu\"),\nperson(given = \"Tong Tong\", family = \"Wu\",\nrole = c(\"aut\"),\nemail = \"tongtong_wu@urmc.rochester.edu\"))",
  "Maintainer": "Eli Sun <eli_sun@urmc.rochester.edu>",
  "Description": "Contains functions that fit linear mixed-effects models\nfor high-dimensional data (p>>n) with penalty for both the\nfixed effects and random effects for variable selection. The\ndetails of the algorithm can be found in Luoying Yang PhD\nthesis (Yang and Wu 2020). The algorithm implementation is\nbased on the R package 'lmmlasso'. Reference: Yang L, Wu TT\n(2020). Model-Based Clustering of Longitudinal Data in\nHigh-Dimensionality. Unpublished thesis.",
  "License": "GPL-3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-27 09:33:49 UTC",
    "User": "root"
  },
  "Author": "Luoying Yang [aut], Eli Sun [aut, cre], Tong Tong Wu [aut]",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2024-06-14 02:44:20 UTC",
  "RemoteUrl": "https://github.com/cran/splmm",
  "RemoteRef": "HEAD",
  "RemoteSha": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
  "_user": "cran",
  "_type": "src",
  "_file": "splmm_1.2.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/18be8a71ffb3a08816f8b9ae3df1d700eea975ecbe6da0cdfe2c3d529ee33c21",
  "_filesize": 211754,
  "_sha256": "18be8a71ffb3a08816f8b9ae3df1d700eea975ecbe6da0cdfe2c3d529ee33c21",
  "_expires": "2027-02-04T09:38:40.000Z",
  "_created": "2026-10-27T09:33:49.000Z",
  "_published": "2026-10-27T09:38:42.713Z",
  "_upstream": "https://github.com/cran/splmm",
  "_status": "success",
  "_maintainer": {
    "name": "Eli Sun",
    "email": "eli_sun@urmc.rochester.edu",
    "login": "esunroc",
    "description": "\n",
    "uuid": 52044450
  },
  "_jobs": [
    {
      "job": 122113750561,
      "time": 139,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12722933191"
    },
    {
      "job": 122113750766,
      "time": 143,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12723207612"
    },
    {
      "job": 122113750665,
      "time": 112,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12722299812"
    },
    {
      "job": 122113750721,
      "time": 141,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12723177672"
    },
    {
      "job": 122111815752,
      "time": 267,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12722779222"
    },
    {
      "job": 122113750549,
      "time": 100,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12723029971"
    },
    {
      "job": 122113750772,
      "time": 217,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12722993299"
    },
    {
      "job": 122113750605,
      "time": 176,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12723840248"
    },
    {
      "job": 122113750719,
      "time": 231,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12722254157"
    },
    {
      "job": 122113750648,
      "time": 147,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12723695410"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010",
  "_commit": {
    "id": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
    "author": "Eli Sun <eli_sun@urmc.rochester.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.2.0\n",
    "time": 1718333060
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.1",
      "role": "Imports"
    },
    {
      "package": "emulator",
      "role": "Imports"
    },
    {
      "package": "miscTools",
      "role": "Imports"
    },
    {
      "package": "penalized",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "plot3D",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "progress",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "lyang19",
      "count": 5,
      "uuid": 23218389
    },
    {
      "user": "esunroc",
      "count": 1,
      "uuid": 52044450
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 634,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 292,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/splmm"
  },
  "_searchresults": 4,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/splmm.html"
  ],
  "_realowner": "esunroc",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2020-09-21"
    },
    {
      "version": "1.1",
      "date": "2020-09-21"
    },
    {
      "version": "1.1.1",
      "date": "2020-10-05"
    },
    {
      "version": "1.1.2",
      "date": "2020-11-22"
    },
    {
      "version": "1.1.3",
      "date": "2021-09-08"
    },
    {
      "version": "1.2.0",
      "date": "2024-06-14"
    }
  ],
  "_exports": [
    "plot.splmm",
    "plot3D.splmm",
    "print.splmm",
    "splmm",
    "splmm.default",
    "splmmControl",
    "splmmTuning",
    "summary.splmm"
  ],
  "_datasets": [
    {
      "name": "cognitive",
      "title": "Kenya School Lunch Intervention Cognitive Dataset",
      "object": "cognitive",
      "file": "cognitive.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "id",
        "schoolid",
        "treatment",
        "rn",
        "year",
        "ravens",
        "arithmetic",
        "vmeaning",
        "dstotal",
        "sex",
        "age_at_time0",
        "height",
        "weight",
        "head_circ",
        "ses",
        "mom_read",
        "mom_write",
        "mom_edu",
        "morbscore",
        "complete",
        "rnone",
        "relmonth",
        "old",
        "morbcut",
        "ravensobs",
        "beforezero"
      ],
      "rows": 1562,
      "table": true,
      "tojson": true
    },
    {
      "name": "simulated_data",
      "title": "Dataset simulated for toy example",
      "object": "simulated_data",
      "file": "simulated_data.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "splmm-package",
      "title": "Simultaneous Penalized Linear Mixed Effects Models",
      "topics": [
        "splmm-package"
      ]
    },
    {
      "page": "cognitive",
      "title": "Kenya School Lunch Intervention Cognitive Dataset",
      "topics": [
        "cognitive"
      ]
    },
    {
      "page": "plot.splmm",
      "title": "Plot the tuning results of a 'splmm.tuning' object",
      "topics": [
        "plot.splmm"
      ]
    },
    {
      "page": "plot3D.splmm",
      "title": "3D Plot the tuning results of a ''splmm.tuning'' object when tuning over both lambda 1 and lambda 2 grids",
      "topics": [
        "plot3D.splmm"
      ]
    },
    {
      "page": "print.splmm",
      "title": "Print a short summary of a splmm object.",
      "topics": [
        "print.splmm"
      ]
    },
    {
      "page": "simulated_data",
      "title": "Dataset simulated for toy example",
      "topics": [
        "simulated_data"
      ]
    },
    {
      "page": "splmm",
      "title": "Function to fit linear mixed-effects model with double penalty for fixed effects and random effects",
      "topics": [
        "splmm",
        "splmm.default"
      ]
    },
    {
      "page": "splmmControl",
      "title": "Options for the 'splmm' Algorithm",
      "topics": [
        "splmmControl"
      ]
    },
    {
      "page": "splmmTuning",
      "title": "Tuning funtion of ''splmm'' object",
      "topics": [
        "splmmTuning"
      ]
    },
    {
      "page": "summary.splmm",
      "title": "Summarize an 'splmm' object",
      "topics": [
        "summary.splmm"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "cpp11",
    "crayon",
    "digest",
    "emulator",
    "farver",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "hms",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "MASS",
    "Matrix",
    "misc3d",
    "miscTools",
    "mvtnorm",
    "penalized",
    "pkgconfig",
    "plot3D",
    "prettyunits",
    "progress",
    "quadform",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "S7",
    "scales",
    "survival",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 1,
  "_indexed": false,
  "_nocasepkg": "splmm",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://esunroc.r-universe.dev/splmm",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-10-27T09:36:07.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
      "fileid": "https://r2.ropensci.org/3946d93ef4c4ba498e3ea7bc2a1ad80e45b368bae9fef002fab7cf979818ee4a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-10-27T09:35:57.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
      "fileid": "https://r2.ropensci.org/eb8bdf107815e99ce91621ff4a9f1ebbc39c153538740f448af4ba915b466fe1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-10-27T09:35:42.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
      "fileid": "https://r2.ropensci.org/cd3f6b1a933e3f90a2aa8122258f197bfba7773b6f240ede3014939ad7645f9e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-10-27T09:35:58.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
      "fileid": "https://r2.ropensci.org/89a50b21677dc44fd4a2d9f050077faa102502ce6ca6615cb42a231d5b95e7a5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.0",
      "date": "2026-10-27T09:36:00.000Z",
      "arch": "emscripten",
      "commit": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
      "fileid": "https://r2.ropensci.org/f8ae8f5ce637c76f3bdf0e679a6fc4f156b966a3ef0cc4575236f2701b90a6fe",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-10-27T09:37:04.000Z",
      "arch": "aarch64",
      "commit": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
      "fileid": "https://r2.ropensci.org/4cf1546b16b3c50ea46105685a05428db36e1df80d05f1a48b198fe77ec79cac",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-10-27T09:35:18.000Z",
      "arch": "x86_64",
      "commit": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
      "fileid": "https://r2.ropensci.org/862c1bab04b1ec5134c574e538ddb98e720438d108951a1c6e74a523b27997d6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-10-27T09:37:21.000Z",
      "arch": "aarch64",
      "commit": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
      "fileid": "https://r2.ropensci.org/b43986bf85d799ec21e415c94e36159b21ea4315eca73bc5c911ff8fc373ed00",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-10-27T09:35:29.000Z",
      "arch": "x86_64",
      "commit": "7d91b0f8175b3029d7e75e086da9027d72c3e33b",
      "fileid": "https://r2.ropensci.org/b38b65c930d3370d08bcbeaa0693fa32a2c35511748b2a89689a9c9cc2a3116e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40481192010"
    }
  ]
}