{ "_id": "6a1f2880b401979e7342356b", "Package": "shinySIR", "Type": "Package", "Title": "Interactive Plotting for Mathematical Models of Infectious\nDisease Spread", "Version": "0.1.2", "Date": "2020-09-30", "Authors@R": "c(person(\"Sinead E.\", \"Morris\", role = c(\"aut\", \"cre\"),\nemail = \"sinead.morris@columbia.edu\",\ncomment = c(ORCID = \"0000-0001-8626-1698\")),\nperson(\"Ottar N.\", \"Bjornstad\", role = \"ctb\"))", "Maintainer": "Sinead E. Morris ", "Description": "Provides interactive plotting for mathematical models of\ninfectious disease spread. Users can choose from a variety of\ncommon built-in ordinary differential equation (ODE) models\n(such as the SIR, SIRS, and SIS models), or create their own.\nThis latter flexibility allows 'shinySIR' to be applied to\nsimple ODEs from any discipline. The package is a useful\nteaching tool as students can visualize how changing different\nparameters can impact model dynamics, with minimal knowledge of\ncoding in R. The built-in models are inspired by those featured\nin Keeling and Rohani (2008) and\nBjornstad (2018) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "6.1.1", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 05:11:36 UTC", "User": "root" }, "Author": "Sinead E. Morris [aut, cre]\n(), Ottar N. Bjornstad\n[ctb]", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2020-10-18 17:50:02 UTC", "RemoteUrl": "https://github.com/cran/shinySIR", "RemoteRef": "HEAD", "RemoteSha": "b7d8aadc229058c031943f855dd455a912dcb453", "MD5sum": "bb37af81ddc266cdb44ef13d39323c41", "_user": "cran", "_type": "src", "_file": "shinySIR_0.1.2.tar.gz", "_fileid": "d58b0133a3b4b1e6e294ca8283c31d1ebd1c998ade13179fa34cd615dd95f203", "_filesize": 999672, "_sha256": "d58b0133a3b4b1e6e294ca8283c31d1ebd1c998ade13179fa34cd615dd95f203", "_created": "2026-05-16T05:11:36.000Z", "_published": "2026-06-02T19:01:20.430Z", "_distro": "noble", "_jobs": [ { "job": 79149486573, "time": 145, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7030712837" }, { "job": 79149486440, "time": 142, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7030712603" }, { "job": 79149485561, "time": 213, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7030695999" }, { "job": 79149485401, "time": 116, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367169532" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/25953493162", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/shinySIR", "_commit": { "id": "b7d8aadc229058c031943f855dd455a912dcb453", "author": "Sinead E. Morris ", "committer": "cran-robot ", "message": "version 0.1.2\n", "time": 1603043402 }, "_maintainer": { "name": "Sinead E. Morris", "email": "sinead.morris@columbia.edu", "orcid": "0000-0001-8626-1698" }, "_registered": true, "_dependencies": [ { "package": "dplyr", "version": ">= 0.8.0.1", "role": "Depends" }, { "package": "tidyr", "version": ">= 0.8.3", "role": "Depends" }, { "package": "ggplot2", "version": ">= 3.1.1", "role": "Depends" }, { "package": "shiny", "version": ">= 1.3.2", "role": "Depends" }, { "package": "deSolve", "version": ">= 1.2.1", "role": "Depends" }, { "package": "knitr", "version": ">= 1.22", "role": "Suggests" }, { "package": "rmarkdown", "version": ">= 1.12", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.2.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 223, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/shinySIR" }, "_searchresults": 15, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/shinySIR.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2020-01-20" }, { "version": "0.1.1", "date": "2020-02-04" }, { "version": "0.1.2", "date": "2020-10-18" } ], "_exports": [ "default_models", "get_name", "get_params", "run_shiny", "seir.app", "seirs.app" ], "_help": [ { "page": "default_models", "title": "Model help", "topics": [ "default_models" ] }, { "page": "get_ics", "title": "Get default initial conditions", "topics": [ "get_ics" ] }, { "page": "get_name", "title": "Get model display names", "topics": [ "get_name" ] }, { "page": "get_params", "title": "Get default parameters", "topics": [ "get_params" ] }, { "page": "plot_model", "title": "Plot model output. This function plots the output of a fitted model data frame.", "topics": [ "plot_model" ] }, { "page": "run_shiny", "title": "Solve equations", "topics": [ "run_shiny" ] }, { "page": "seir.app", "title": "Launch a shiny-app simulating the seasonal SEIR model", "topics": [ "seir.app" ] }, { "page": "seirs.app", "title": "Launch a shiny-app simulating the SEIRS model", "topics": [ "seirs.app" ] }, { "page": "SIR", "title": "SIR model", "topics": [ "SIR" ] }, { "page": "SIRbirths", "title": "SIR model with demography", "topics": [ "SIRbirths" ] }, { "page": "SIRS", "title": "SIRS model", "topics": [ "SIRS" ] }, { "page": "SIRSbirths", "title": "SIRS model with demography", "topics": [ "SIRSbirths" ] }, { "page": "SIRSvaccination", "title": "SIRS model with vaccination at birth", "topics": [ "SIRSvaccination" ] }, { "page": "SIRvaccination", "title": "SIR model with vaccination at birth", "topics": [ "SIRvaccination" ] }, { "page": "SIS", "title": "SIS model", "topics": [ "SIS" ] }, { "page": "SISbirths", "title": "SIS model with demography", "topics": [ "SISbirths" ] }, { "page": "solve_eqns", "title": "Solve equations", "topics": [ "solve_eqns" ] } ], "_rundeps": [ "base64enc", "bslib", "cachem", "cli", "commonmark", "cpp11", "deSolve", "digest", "dplyr", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "gtable", "htmltools", "httpuv", "isoband", "jquerylib", "jsonlite", "labeling", "later", "lifecycle", "magrittr", "memoise", "mime", "otel", "pillar", "pkgconfig", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rlang", "S7", "sass", "scales", "shiny", "sourcetools", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "withr", "xtable" ], "_vignettes": [ { "source": "Vignette.Rmd", "filename": "Vignette.html", "title": "shinySIR: Interactive plotting for infectious disease models", "engine": "knitr::rmarkdown", "headings": [ "Basic information", "Author and maintainer", "Contributors", "Citing this package", "Getting help", "Recent updates", "Quick start example", "Model specification", "User-defined models", "Built-in models", "SIR", "SIR with demography", "SIR with vaccination at birth", "SIS", "SIS with demography", "SIRS", "SIRS with demography", "SIRS with vaccination", "More detailed examples", "References" ], "created": "2020-01-20 08:30:05", "modified": "2020-02-03 20:50:02", "commits": 2 } ], "_score": 2.1760912590556813, "_indexed": true, "_nocasepkg": "shinysir", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.2", "date": "2026-05-16T05:13:52.000Z", "distro": "noble", "commit": "b7d8aadc229058c031943f855dd455a912dcb453", "fileid": "036551ad33cc1dc906f5a256f409dace91cae219192db04887c11fddf06d6916", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/25953493162" }, { "r": "4.6.0", "os": "linux", "version": "0.1.2", "date": "2026-05-16T05:13:49.000Z", "distro": "noble", "commit": "b7d8aadc229058c031943f855dd455a912dcb453", "fileid": "628595e8722857396ed6b63ef720cd649caa672bdf965ee62745b6c3ac2caa0c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/25953493162" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.2", "date": "2026-06-02T19:00:53.000Z", "commit": "b7d8aadc229058c031943f855dd455a912dcb453", "fileid": "e24d695ab8ba216919971666b95c37613c125176154abb9f34b421fcaf757c16", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/25953493162" } ] }