{
  "_id": "6a12956bacfb0bcc41d0c2e4",
  "Package": "scbursts",
  "Version": "1.6",
  "Date": "2019-06-24",
  "Title": "Single Channel Bursts Analysis",
  "Description": "Provides tools to import and export from several existing\npieces of ion-channel analysis software such as 'TAC', 'QUB',\n'SCAN', and 'Clampfit', implements procedures such as\ndwell-time correction and defining bursts with a critical time,\nand provides tools for analysis of bursts, such as tools for\nsorting and plotting.",
  "Author": "Blair Drummomd [aut], Mathieu Dextraze [ctb]",
  "Maintainer": "Blair Drummond <blair.robert.drummond@gmail.com>",
  "License": "LGPL-2.1",
  "RoxygenNote": "6.1.1",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-24 06:03:58 UTC",
    "User": "root"
  },
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2019-07-06 14:30:03 UTC",
  "RemoteUrl": "https://github.com/cran/scbursts",
  "RemoteRef": "HEAD",
  "RemoteSha": "317ecb85745a2a6553057f2fa2779946fc24c619",
  "MD5sum": "18a4039a72fed1d91fe72b2a9585b027",
  "_user": "cran",
  "_type": "src",
  "_file": "scbursts_1.6.tar.gz",
  "_fileid": "6643f5ea7a2f16b2684e5d5e4852b1348235810e5f1702aa2229ae5aaa6009c9",
  "_filesize": 1054110,
  "_sha256": "6643f5ea7a2f16b2684e5d5e4852b1348235810e5f1702aa2229ae5aaa6009c9",
  "_created": "2026-05-24T06:03:58.000Z",
  "_published": "2026-05-24T06:06:35.561Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77576049639,
      "time": 116,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7182734263"
    },
    {
      "job": 77576049636,
      "time": 121,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7182734902"
    },
    {
      "job": 77575874474,
      "time": 185,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182721493"
    },
    {
      "job": 77576049632,
      "time": 101,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7182732696"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26353512313",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/scbursts",
  "_commit": {
    "id": "317ecb85745a2a6553057f2fa2779946fc24c619",
    "author": "Blair Drummond <blair.robert.drummond@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.6\n",
    "time": 1562423403
  },
  "_maintainer": {
    "name": "Blair Drummond",
    "email": "blair.robert.drummond@gmail.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "readxl",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "tinytex",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 191,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/scbursts"
  },
  "_searchresults": 43,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/scbursts.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.4",
      "date": "2019-03-04"
    },
    {
      "version": "1.6",
      "date": "2019-07-06"
    }
  ],
  "_exports": [
    "bursts.check_subconductance",
    "bursts.conductance_states",
    "bursts.copy",
    "bursts.defined_by_tcrit",
    "bursts.get_gaps",
    "bursts.impose_deadtime",
    "bursts.modify_conductance",
    "bursts.pcloseds",
    "bursts.popens",
    "bursts.recombine",
    "bursts.remove_first_and_last",
    "bursts.select",
    "bursts.sort",
    "bursts.space_out",
    "bursts.start_times_update",
    "bursts.subconductance_as",
    "clampfit.read",
    "cplot.conductance_hist",
    "cplot.log_root_axes",
    "cplot.pclosed_ts",
    "cplot.popen_ts",
    "dwt.read",
    "dwt.write",
    "evt.extract_header",
    "evt.from_dwells",
    "evt.read",
    "evt.to_dwells",
    "evt.write",
    "hst.extract_header",
    "hst.read",
    "hst.write",
    "risetime.correct_gaussian",
    "scan.read",
    "segment.check_subconductance",
    "segment.closed_dwells",
    "segment.conductance_states",
    "segment.copy",
    "segment.count_closed",
    "segment.count_dwells",
    "segment.count_open",
    "segment.create",
    "segment.duration",
    "segment.dwells_by_conductance",
    "segment.dwells_by_conductance_range",
    "segment.impose_deadtime",
    "segment.modify_conductance",
    "segment.name",
    "segment.open_dwells",
    "segment.pclosed",
    "segment.pconductance",
    "segment.pconductance_range",
    "segment.popen",
    "segment.seg",
    "segment.start_time",
    "segment.subconductance_as",
    "segment.verify",
    "util.basename"
  ],
  "_help": [
    {
      "page": "bursts.check_subconductance",
      "title": "Check if segment contains subconductive states",
      "topics": [
        "bursts.check_subconductance"
      ]
    },
    {
      "page": "bursts.conductance_states",
      "title": "Return a list of all the (sub)conductance states.",
      "topics": [
        "bursts.conductance_states"
      ]
    },
    {
      "page": "bursts.copy",
      "title": "Copy a list of bursts (by value)",
      "topics": [
        "bursts.copy"
      ]
    },
    {
      "page": "bursts.defined_by_tcrit",
      "title": "Divide a recording into bursts defined by a critical time.",
      "topics": [
        "bursts.defined_by_tcrit"
      ]
    },
    {
      "page": "bursts.get_gaps",
      "title": "Get the gaps between bursts.",
      "topics": [
        "bursts.get_gaps"
      ]
    },
    {
      "page": "bursts.impose_deadtime",
      "title": "Imposes a deadtime to each segment in a burst.",
      "topics": [
        "bursts.impose_deadtime"
      ]
    },
    {
      "page": "bursts.modify_conductance",
      "title": "Transform the conductance states according to a user-defined function of conductance level.",
      "topics": [
        "bursts.modify_conductance"
      ]
    },
    {
      "page": "bursts.pcloseds",
      "title": "Return pcloseds of every burst.",
      "topics": [
        "bursts.pcloseds"
      ]
    },
    {
      "page": "bursts.popens",
      "title": "Return popens of every burst.",
      "topics": [
        "bursts.popens"
      ]
    },
    {
      "page": "bursts.recombine",
      "title": "Combine bursts into one recording (with obvious spaces between them).",
      "topics": [
        "bursts.recombine"
      ]
    },
    {
      "page": "bursts.remove_first_and_last",
      "title": "Remove the first and last burst from the list.",
      "topics": [
        "bursts.remove_first_and_last"
      ]
    },
    {
      "page": "bursts.select",
      "title": "From a list of bursts, extract those that interest you by passing a selecting function.",
      "topics": [
        "bursts.select"
      ]
    },
    {
      "page": "bursts.sort",
      "title": "Order a list of bursts by some function. For instance, popen.",
      "topics": [
        "bursts.sort"
      ]
    },
    {
      "page": "bursts.space_out",
      "title": "Artificially add amount of time between bursts (in absence of recording information).",
      "topics": [
        "bursts.space_out"
      ]
    },
    {
      "page": "bursts.start_times_update",
      "title": "(DON'T USE THIS) Fix meta-data of bursts.",
      "topics": [
        "bursts.start_times_update"
      ]
    },
    {
      "page": "bursts.subconductance_as",
      "title": "Imposes a fixed conductance level (0 or 1) to all dwells with subconductance levels to each segment in a burst",
      "topics": [
        "bursts.subconductance_as"
      ]
    },
    {
      "page": "clampfit.read",
      "title": "Read a .xlsx file output from clampfit",
      "topics": [
        "clampfit.read"
      ]
    },
    {
      "page": "cplot.conductance_hist",
      "title": "Histogram of Conductance States",
      "topics": [
        "cplot.conductance_hist"
      ]
    },
    {
      "page": "cplot.log_root_axes",
      "title": "Add log-root axes to histogram plot",
      "topics": [
        "cplot.log_root_axes"
      ]
    },
    {
      "page": "cplot.pclosed_ts",
      "title": "Plot Time Series (ts) of P(Closed).",
      "topics": [
        "cplot.pclosed_ts"
      ]
    },
    {
      "page": "cplot.popen_ts",
      "title": "Plot Time Series (ts) of P(Open).",
      "topics": [
        "cplot.popen_ts"
      ]
    },
    {
      "page": "dwt.read",
      "title": "Read a .dwt file.",
      "topics": [
        "dwt.read"
      ]
    },
    {
      "page": "dwt.write",
      "title": "Write a dwt file to disk. Writes DOS line endings. Dwells are in milliseconds",
      "topics": [
        "dwt.write"
      ]
    },
    {
      "page": "evt.extract_header",
      "title": "Extract header from evt file.",
      "topics": [
        "evt.extract_header"
      ]
    },
    {
      "page": "evt.from_dwells",
      "title": "Converts dwell durations to absolute transition times.",
      "topics": [
        "evt.from_dwells"
      ]
    },
    {
      "page": "evt.read",
      "title": "Read a .evt file to a table. Times are in seconds",
      "topics": [
        "evt.read"
      ]
    },
    {
      "page": "evt.to_dwells",
      "title": "Calculate pulse lengths. Converts transition times to dwell durations.",
      "topics": [
        "evt.to_dwells"
      ]
    },
    {
      "page": "evt.write",
      "title": "Write bursts to a .evt file.",
      "topics": [
        "evt.write"
      ]
    },
    {
      "page": "hst.extract_header",
      "title": "Extract header from hst file.",
      "topics": [
        "hst.extract_header"
      ]
    },
    {
      "page": "hst.read",
      "title": "Read a MIL \".hst\" file to a table.",
      "topics": [
        "hst.read"
      ]
    },
    {
      "page": "hst.write",
      "title": "Write bursts to a log10(ms)-sqrt(Frequency) .hst file from open and closed tables.",
      "topics": [
        "hst.write"
      ]
    },
    {
      "page": "risetime.correct_gaussian",
      "title": "Undo the effect of the gaussian filter.",
      "topics": [
        "risetime.correct_gaussian"
      ]
    },
    {
      "page": "scan.read",
      "title": "Read a scan results text file. scan.read returns a 1 segment list Reads in scan results and puts them in the same format as the output of dwt.read. See 'dwt', and 'segment' for more information.",
      "topics": [
        "scan.read"
      ]
    },
    {
      "page": "segment.check_subconductance",
      "title": "Check if segment contains subconductive states",
      "topics": [
        "segment.check_subconductance"
      ]
    },
    {
      "page": "segment.closed_dwells",
      "title": "Extract closed dwells.",
      "topics": [
        "segment.closed_dwells"
      ]
    },
    {
      "page": "segment.conductance_states",
      "title": "Return a list of all the (sub)conductance states.",
      "topics": [
        "segment.conductance_states"
      ]
    },
    {
      "page": "segment.consecutives_to_dwells",
      "title": "Collapses a segment into dwells with alternating conductance levels.",
      "topics": [
        "segment.consecutives_to_dwells"
      ]
    },
    {
      "page": "segment.copy",
      "title": "Copy a segment",
      "topics": [
        "segment.copy"
      ]
    },
    {
      "page": "segment.count_closed",
      "title": "Extract number of closed dwells. In the case of subconductive states, a dwell is only closed if the conductance is exactly zero.",
      "topics": [
        "segment.count_closed"
      ]
    },
    {
      "page": "segment.count_dwells",
      "title": "Extract number of dwells in segment.",
      "topics": [
        "segment.count_dwells"
      ]
    },
    {
      "page": "segment.count_open",
      "title": "Extract number of open dwells. In the case of subconductive states, count the number of non-zero states.",
      "topics": [
        "segment.count_open"
      ]
    },
    {
      "page": "segment.create",
      "title": "Create a \"segment\" object",
      "topics": [
        "segment.create"
      ]
    },
    {
      "page": "segment.duration",
      "title": "Get duration of a segment.",
      "topics": [
        "segment.duration"
      ]
    },
    {
      "page": "segment.dwells_by_conductance",
      "title": "Extract dwells in conductance range. lower <= x <= upper",
      "topics": [
        "segment.dwells_by_conductance"
      ]
    },
    {
      "page": "segment.dwells_by_conductance_range",
      "title": "Extract dwells in conductance range. lower <= x <= upper",
      "topics": [
        "segment.dwells_by_conductance_range"
      ]
    },
    {
      "page": "segment.impose_deadtime",
      "title": "Imposes a deadtime to a segment by removing any dwell that is shorter than the deadtime.",
      "topics": [
        "segment.impose_deadtime"
      ]
    },
    {
      "page": "segment.modify_conductance",
      "title": "Transform the conductance states according to a user-defined function of conductance level.",
      "topics": [
        "segment.modify_conductance"
      ]
    },
    {
      "page": "segment.name",
      "title": "Extract name from segment.",
      "topics": [
        "segment.name"
      ]
    },
    {
      "page": "segment.open_dwells",
      "title": "Extract open dwells. (Any conductance greater than zero)",
      "topics": [
        "segment.open_dwells"
      ]
    },
    {
      "page": "segment.pclosed",
      "title": "Calculate empirical P(Closed) of a segment.",
      "topics": [
        "segment.pclosed"
      ]
    },
    {
      "page": "segment.pconductance",
      "title": "Calculate empirical P(Lower <= Conductance <= Upper) of a segment.",
      "topics": [
        "segment.pconductance"
      ]
    },
    {
      "page": "segment.pconductance_range",
      "title": "Calculate empirical P(Lower <= Conductance <= Upper) of a segment.",
      "topics": [
        "segment.pconductance_range"
      ]
    },
    {
      "page": "segment.popen",
      "title": "Calculate empirical P(Open) of a segment. (A state is considered open if the conductance is non-zero)",
      "topics": [
        "segment.popen"
      ]
    },
    {
      "page": "segment.seg",
      "title": "Extract segment number from segment.",
      "topics": [
        "segment.seg"
      ]
    },
    {
      "page": "segment.start_time",
      "title": "Extract start_time from segment.",
      "topics": [
        "segment.start_time"
      ]
    },
    {
      "page": "segment.subconductance_as",
      "title": "Imposes a fixed conductance level (0 or 1) to all dwells with subconductance levels.",
      "topics": [
        "segment.subconductance_as"
      ]
    },
    {
      "page": "segment.verify",
      "title": "Detect misrecorded data.",
      "topics": [
        "segment.verify"
      ]
    },
    {
      "page": "util.basename",
      "title": "Remove suffix and path from filename.",
      "topics": [
        "util.basename"
      ]
    }
  ],
  "_rundeps": [
    "cellranger",
    "cli",
    "cpp11",
    "crayon",
    "glue",
    "hms",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "R6",
    "readxl",
    "rematch",
    "rlang",
    "tibble",
    "utf8",
    "vctrs"
  ],
  "_vignettes": [
    {
      "source": "scbursts.Rmd",
      "filename": "scbursts.html",
      "title": "Single Channel Burst Analysis with scbursts",
      "author": "Drummond et al.",
      "engine": "knitr::rmarkdown",
      "headings": [
        ".evts, .dwts, .txts, and .xls(x)",
        "Handling .evts",
        "Handling QUB .dwts",
        "Handling SCAN files",
        "Handling Clampfit files",
        "Segments",
        "Bursts",
        "Taking a subset",
        "An Example: Correcting Recording Errors",
        "(Advanced) Writing bursts back to files",
        "Sorting and more",
        "Working with bursts v.s. segments",
        "Risetime Correction",
        "Plotting",
        "Open times and closed times (uncorrected)",
        "P(Open) (uncorrected)",
        "Time Series (uncorrected)",
        "Subconductive States",
        "Example Workflows",
        "DWT",
        "EVT",
        "SCAN",
        "QUB",
        "Clampfit",
        "Example With Subconductive States",
        "References"
      ],
      "created": "2019-02-27 18:20:03",
      "modified": "2019-07-06 14:30:03",
      "commits": 2
    }
  ],
  "_score": 2.6334684555795866,
  "_indexed": true,
  "_nocasepkg": "scbursts",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.6",
      "date": "2026-05-24T06:06:00.000Z",
      "distro": "noble",
      "commit": "317ecb85745a2a6553057f2fa2779946fc24c619",
      "fileid": "b0819bef674e814d28b5db77fbc9f4203396bfd44a3debd31e44ffebbc013fa3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26353512313"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.6",
      "date": "2026-05-24T06:06:04.000Z",
      "distro": "noble",
      "commit": "317ecb85745a2a6553057f2fa2779946fc24c619",
      "fileid": "9d7833b0ab4ff20092748601c735126022cf3c9de6fccdc9ee4ad3ca44e5ed6b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26353512313"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.6",
      "date": "2026-05-24T06:06:02.000Z",
      "commit": "317ecb85745a2a6553057f2fa2779946fc24c619",
      "fileid": "587089e17d6c1ee38a8c514eb0df290cc208cf036e37fd85723ba4153cd214f2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26353512313"
    }
  ]
}