{ "_id": "6a1f004bb401979e7341ad45", "Package": "rpql", "Title": "Regularized PQL for Joint Selection in GLMMs", "Version": "0.8.3", "Date": "2025-12-31", "Authors@R": "c(person(given = \"Francis K.C.\",\nfamily = \"Hui\",\nrole = c(\"aut\", \"cre\"),\nemail = \"fhui28@gmail.com\"))", "Maintainer": "Francis K.C. Hui ", "Description": "Performs joint selection in Generalized Linear Mixed\nModels (GLMMs) using penalized likelihood methods.\nSpecifically, the Penalized Quasi-Likelihood (PQL) is used as a\nloss function, and penalties are then augmented to perform\nsimultaneous fixed and random effects selection. Regularized\nPQL avoids the need for integration (or approximations such as\nthe Laplace's method) during the estimation process, and so the\nfull solution path for model selection can be constructed\nrelatively quickly.", "License": "GPL-3", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-18 08:55:44 UTC", "User": "root" }, "Author": "Francis K.C. Hui [aut, cre]", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-12-17 22:40:07 UTC", "RemoteUrl": "https://github.com/cran/rpql", "RemoteRef": "HEAD", "RemoteSha": "c3ee81f7495f599fbb4ea8fcfe49aadc4bec3c8f", "MD5sum": "98a5a721dac11bb3cc95382690404eea", "_user": "cran", "_type": "src", "_file": "rpql_0.8.3.tar.gz", "_fileid": "455d0ecb8fd3b7de0225dbb082ce1bdec888c99b9eef61a69f2256e1ce109cbf", "_filesize": 371676, "_sha256": "455d0ecb8fd3b7de0225dbb082ce1bdec888c99b9eef61a69f2256e1ce109cbf", "_created": "2026-05-18T08:55:44.000Z", "_published": "2026-06-02T16:09:47.566Z", "_distro": "noble", "_jobs": [ { "job": 79116852035, "time": 150, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7053534942" }, { "job": 79116851587, "time": 137, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7053531144" }, { "job": 79116852754, "time": 130, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7053528696" }, { "job": 79116852483, "time": 134, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7053529566" }, { "job": 79116850861, "time": 193, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7053482592" }, { "job": 79116851154, "time": 121, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7363309584" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26023225007", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/rpql", "_commit": { "id": "c3ee81f7495f599fbb4ea8fcfe49aadc4bec3c8f", "author": "Francis K.C. Hui ", "committer": "cran-robot ", "message": "version 0.8.3\n", "time": 1766011207 }, "_maintainer": { "name": "Francis K.C. Hui", "email": "fhui28@gmail.com", "login": "fhui28", "description": "I like anime, drinking tea, and occasionally doing some statistics. ", "uuid": 5235076 }, "_registered": true, "_dependencies": [ { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "gamlss.dist", "role": "Imports" }, { "package": "lme4", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "mvtnorm", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "nlme", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 1 }, { "week": "2025-51", "n": 1 } ], "_tags": [ { "name": "0.8.2", "date": "2025-07-26" }, { "name": "0.8.3", "date": "2025-12-17" } ], "_stars": 0, "_contributors": [ { "user": "fhui28", "count": 8, "uuid": 5235076 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 228, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rpql" }, "_searchresults": 18, "_topics": [ "openblas", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/rpql.html", "manual.pdf" ], "_realowner": "fhui28", "_cranurl": false, "_releases": [ { "version": "0.5", "date": "2016-10-07" }, { "version": "0.6", "date": "2018-04-23" }, { "version": "0.7", "date": "2018-12-05" }, { "version": "0.7.1", "date": "2020-06-05" }, { "version": "0.8", "date": "2020-06-16" }, { "version": "0.8.1", "date": "2023-08-20" }, { "version": "0.8.2", "date": "2025-08-01" }, { "version": "0.8.3", "date": "2025-12-17" } ], "_exports": [ "build.start.fit", "calc.marglogL", "gendat.glmm", "lseq", "nb2", "rpql", "rpql.default", "rpqlseq", "summary.rpql" ], "_help": [ { "page": "rpql-package", "title": "Joint effects selection in GLMMs using regularized PQL", "topics": [ "rpql-package" ] }, { "page": "build.start.fit", "title": "Constructs a start fit for use in the 'rpql' function", "topics": [ "build.start.fit" ] }, { "page": "calc.marglogL", "title": "Calculate the marginal log-likelihood for a GLMM fitted using 'rpql'", "topics": [ "calc.marglogL" ] }, { "page": "gendat.glmm", "title": "Simulates datasets based on a Generalized Linear Mixed Model (GLMM).", "topics": [ "gendat.glmm" ] }, { "page": "lseq", "title": "Generates a sequence of tuning parameters on the log scale", "topics": [ "lseq" ] }, { "page": "nb2", "title": "A negative binomial family", "topics": [ "nb2" ] }, { "page": "rpql", "title": "Joint effects selection in GLMMs using regularized PQL.", "topics": [ "print.rpql", "rpql", "rpql.default" ] }, { "page": "rpqlseq", "title": "Wrapper function for joint effects selection in GLMMs using regularized PQL.", "topics": [ "rpqlseq" ] }, { "page": "summary.rpql", "title": "Summary of GLMM fitted using regularized PQL.", "topics": [ "print.summary.rpql", "summary.rpql" ] } ], "_rundeps": [ "boot", "gamlss.dist", "lattice", "lme4", "MASS", "Matrix", "minqa", "mvtnorm", "nlme", "nloptr", "rbibutils", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "rlang" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 1.5563025007672873, "_indexed": false, "_nocasepkg": "rpql", "_universes": [ "cran" ], "_indexurl": "https://fhui28.r-universe.dev/rpql", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.8.3", "date": "2026-05-18T08:58:10.000Z", "distro": "noble", "arch": "aarch64", "commit": "c3ee81f7495f599fbb4ea8fcfe49aadc4bec3c8f", "fileid": "c32dcbdb5c02410e6e2bd862a7b1a5032aee846c1d4e6cfd95409db15739faef", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26023225007" }, { "r": "4.7.0", "os": "linux", "version": "0.8.3", "date": "2026-05-18T08:57:52.000Z", "distro": "noble", "arch": "x86_64", "commit": "c3ee81f7495f599fbb4ea8fcfe49aadc4bec3c8f", "fileid": "0c2cac31e80ec0f45acd0a8474af22c825a985e052e443a25cce67a54f08b241", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26023225007" }, { "r": "4.6.0", "os": "linux", "version": "0.8.3", "date": "2026-05-18T08:57:49.000Z", "distro": "noble", "arch": "aarch64", "commit": "c3ee81f7495f599fbb4ea8fcfe49aadc4bec3c8f", "fileid": "a5d4cf93bda6b9bf3d5d6b8af61215989701eb352cd8cfb27ba7c2de544ecb8c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26023225007" }, { "r": "4.6.0", "os": "linux", "version": "0.8.3", "date": "2026-05-18T08:57:49.000Z", "distro": "noble", "arch": "x86_64", "commit": "c3ee81f7495f599fbb4ea8fcfe49aadc4bec3c8f", "fileid": "a3dfe9e5729d590c7fd9ae246d1c7504e35c598f9e4e2da22aaab60b0a01093a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26023225007" }, { "r": "4.6.0", "os": "wasm", "version": "0.8.3", "date": "2026-06-02T16:09:22.000Z", "arch": "emscripten", "commit": "c3ee81f7495f599fbb4ea8fcfe49aadc4bec3c8f", "fileid": "eb2db8a4b63c831c5fc7e4eaf231d072681514062ed8015f65e53dbeb13bdfeb", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26023225007" } ] }