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  "Title": "Assessing Package Risk Metrics",
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  "Description": "A reliable and validated tool that captures detailed risk\nmetrics such as R 'CMD' check, test coverage, traceability\nmatrix, documentation, dependencies, reverse dependencies,\nsuggested dependency analysis, repository data, and enhanced\nreporting for R packages that are local or stored on remote\nrepositories such as GitHub, CRAN, and Bioconductor.",
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  "URL": "https://pharmaverse.github.io/risk.assessr/",
  "BugReports": "https://github.com/pharmaverse/risk.assessr/issues",
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    "average_issue_close_time",
    "bioconductor_reverse_deps",
    "build_dependency_tree",
    "check_and_fetch_cran_package",
    "check_cran_package",
    "count_commits_last_months",
    "cran_packages",
    "cran_revdep",
    "create_traceability_matrix",
    "dependsOnPkgs",
    "detect_version_conflicts",
    "download_and_parse_dependencies",
    "extract_package_version",
    "extract_thresholds_by_id",
    "extract_thresholds_by_key",
    "extract_version",
    "fetch_all_dependencies",
    "fetch_bioconductor_package_info",
    "fetch_bioconductor_releases",
    "generate_html_report",
    "generate_traceability_matrix",
    "get_bioconductor_package_url",
    "get_commits_since",
    "get_cran_package_url",
    "get_cran_total_downloads",
    "get_exports",
    "get_github_data",
    "get_host_package",
    "get_internal_package_url",
    "get_package_download_bioconductor",
    "get_package_download_cran",
    "get_package_tarfile",
    "get_pkg_name",
    "get_pubmed_by_year",
    "get_pubmed_count",
    "get_risk_analysis",
    "get_risk_definition",
    "get_session_dependencies",
    "get_suggested_exp_funcs",
    "get_versions",
    "install_package_local",
    "is_base",
    "list_badges",
    "modify_description_file",
    "parse_bioconductor_releases",
    "parse_html_version",
    "parse_package_info",
    "print_tree",
    "risk_assess_pkg",
    "risk_assess_pkg_lock_files",
    "set_up_pkg",
    "write_summary_report"
  ],
  "_help": [
    {
      "page": "assess_pkg_r_package",
      "title": "Assess an R package by name (deprecated)",
      "topics": [
        "assess_pkg_r_package"
      ]
    },
    {
      "page": "average_issue_close_time",
      "title": "Calculate Average Time to Close GitHub Issues",
      "topics": [
        "average_issue_close_time"
      ]
    },
    {
      "page": "bioconductor_reverse_deps",
      "title": "Find Bioconductor Package Reverse Dependencies",
      "topics": [
        "bioconductor_reverse_deps"
      ]
    },
    {
      "page": "build_dependency_tree",
      "title": "Build a Dependency Tree for an R Package",
      "topics": [
        "build_dependency_tree"
      ]
    },
    {
      "page": "check_and_fetch_cran_package",
      "title": "Check and Fetch CRAN Package",
      "topics": [
        "check_and_fetch_cran_package"
      ]
    },
    {
      "page": "check_cran_package",
      "title": "Check if a Package Exists on CRAN",
      "topics": [
        "check_cran_package"
      ]
    },
    {
      "page": "count_commits_last_months",
      "title": "Count Commits in the Last Months",
      "topics": [
        "count_commits_last_months"
      ]
    },
    {
      "page": "cran_packages",
      "title": "Retrieve the List of CRAN Packages (Internal)",
      "topics": [
        "cran_packages"
      ]
    },
    {
      "page": "cran_revdep",
      "title": "Find Reverse Dependencies of a CRAN Package",
      "topics": [
        "cran_revdep"
      ]
    },
    {
      "page": "create_traceability_matrix",
      "title": "Create a Traceability Matrix",
      "topics": [
        "create_traceability_matrix"
      ]
    },
    {
      "page": "dependsOnPkgs",
      "title": "Determine Packages that Depend on Given Packages",
      "topics": [
        "dependsOnPkgs"
      ]
    },
    {
      "page": "detect_version_conflicts",
      "title": "Detect Version Conflicts from dependency tree",
      "topics": [
        "detect_version_conflicts"
      ]
    },
    {
      "page": "download_and_parse_dependencies",
      "title": "Download and Parse Dependencies of an R Package",
      "topics": [
        "download_and_parse_dependencies"
      ]
    },
    {
      "page": "extract_package_version",
      "title": "Extract the Installed Version of a Package",
      "topics": [
        "extract_package_version"
      ]
    },
    {
      "page": "extract_thresholds_by_id",
      "title": "Extract risk thresholds by id",
      "topics": [
        "extract_thresholds_by_id"
      ]
    },
    {
      "page": "extract_thresholds_by_key",
      "title": "Extract risk thresholds by key",
      "topics": [
        "extract_thresholds_by_key"
      ]
    },
    {
      "page": "extract_version",
      "title": "Extract Package Version from File Path",
      "topics": [
        "extract_version"
      ]
    },
    {
      "page": "fetch_all_dependencies",
      "title": "Fetch All Dependencies for a Package",
      "topics": [
        "fetch_all_dependencies"
      ]
    },
    {
      "page": "fetch_bioconductor_package_info",
      "title": "Fetch Bioconductor Package Information",
      "topics": [
        "fetch_bioconductor_package_info"
      ]
    },
    {
      "page": "fetch_bioconductor_releases",
      "title": "Fetch Bioconductor Release Announcements",
      "topics": [
        "fetch_bioconductor_releases"
      ]
    },
    {
      "page": "generate_html_report",
      "title": "Generate HTML Report for Package Assessment",
      "topics": [
        "generate_html_report"
      ]
    },
    {
      "page": "generate_traceability_matrix",
      "title": "Assess an R Package traceability matrix from package name and version",
      "topics": [
        "generate_traceability_matrix"
      ]
    },
    {
      "page": "get_bioconductor_package_url",
      "title": "Retrieve Bioconductor Package URL",
      "topics": [
        "get_bioconductor_package_url"
      ]
    },
    {
      "page": "get_commits_since",
      "title": "Retrieve GitHub Commits as Weekly Counts (using curl)",
      "topics": [
        "get_commits_since"
      ]
    },
    {
      "page": "get_cran_package_url",
      "title": "Get CRAN Package URL",
      "topics": [
        "get_cran_package_url"
      ]
    },
    {
      "page": "get_cran_total_downloads",
      "title": "Get CRAN Total or Recent Downloads for a Package",
      "topics": [
        "get_cran_total_downloads"
      ]
    },
    {
      "page": "get_exports",
      "title": "list all package exports",
      "topics": [
        "get_exports"
      ]
    },
    {
      "page": "get_github_data",
      "title": "Fetch GitHub Repository Data",
      "topics": [
        "get_github_data"
      ]
    },
    {
      "page": "get_host_package",
      "title": "Extract and Validate Package Hosting Information",
      "topics": [
        "get_host_package"
      ]
    },
    {
      "page": "get_internal_package_url",
      "title": "Get Internal Package URL",
      "topics": [
        "get_internal_package_url"
      ]
    },
    {
      "page": "get_package_download_bioconductor",
      "title": "Get Bioconductor Package Download Statistics",
      "topics": [
        "get_package_download_bioconductor"
      ]
    },
    {
      "page": "get_package_download_cran",
      "title": "Get CRAN Daily Downloads for a Package",
      "topics": [
        "get_package_download_cran"
      ]
    },
    {
      "page": "get_package_tarfile",
      "title": "Download R Package Source Tarball",
      "topics": [
        "get_package_tarfile"
      ]
    },
    {
      "page": "get_pkg_name",
      "title": "get package name for display",
      "topics": [
        "get_pkg_name"
      ]
    },
    {
      "page": "get_pubmed_by_year",
      "title": "Get Annual PubMed Article Counts for a Search Term",
      "topics": [
        "get_pubmed_by_year"
      ]
    },
    {
      "page": "get_pubmed_count",
      "title": "Get Total Number of PubMed Articles for a Search Term",
      "topics": [
        "get_pubmed_count"
      ]
    },
    {
      "page": "get_risk_analysis",
      "title": "Get Risk Analysis",
      "topics": [
        "get_risk_analysis"
      ]
    },
    {
      "page": "get_risk_definition",
      "title": "Get Risk Definition",
      "topics": [
        "get_risk_definition"
      ]
    },
    {
      "page": "get_session_dependencies",
      "title": "Get Dependencies",
      "topics": [
        "get_session_dependencies"
      ]
    },
    {
      "page": "get_suggested_exp_funcs",
      "title": "Function to get suggested exported functions",
      "topics": [
        "get_suggested_exp_funcs"
      ]
    },
    {
      "page": "get_versions",
      "title": "Get Package Versions",
      "topics": [
        "get_versions"
      ]
    },
    {
      "page": "install_package_local",
      "title": "Install package locally",
      "topics": [
        "install_package_local"
      ]
    },
    {
      "page": "is_base",
      "title": "Check if a Package is a Base or Recommended R Package",
      "topics": [
        "is_base"
      ]
    },
    {
      "page": "list_badges",
      "title": "List badges image URLs from a local README",
      "topics": [
        "list_badges"
      ]
    },
    {
      "page": "modify_description_file",
      "title": "Modify the DESCRIPTION File in a R Package Tarball",
      "topics": [
        "modify_description_file"
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    },
    {
      "page": "parse_bioconductor_releases",
      "title": "Parse Bioconductor Release Announcements",
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        "parse_bioconductor_releases"
      ]
    },
    {
      "page": "parse_package_info",
      "title": "Parse Package Information from CRAN Archive",
      "topics": [
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    },
    {
      "page": "print_tree",
      "title": "Print a Package Dependency Tree",
      "topics": [
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    },
    {
      "page": "risk_assess_pkg",
      "title": "Assess package for risk metrics",
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    },
    {
      "page": "risk_assess_pkg_lock_files",
      "title": "Process lock files",
      "topics": [
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    },
    {
      "page": "set_up_pkg",
      "title": "Creates information on package installation",
      "topics": [
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      ]
    },
    {
      "page": "write_summary_report",
      "title": "Write the risk assessment summary report",
      "topics": [
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      ]
    }
  ],
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