{
  "_id": "6a325a593efcd9bda4381b68",
  "Package": "ribiosMath",
  "Type": "Package",
  "Title": "Mathematical and Statistical Tools in 'ribios'",
  "Version": "1.2.0",
  "Date": "2026-01-24",
  "Authors@R": "c(person(given = \"Jitao David\",\nfamily = \"Zhang\",\nrole = c(\"aut\", \"cre\", \"ctb\"),\nemail = \"jitao_david.zhang@roche.com\",\ncomment = c(ORCID=\"0000-0002-3085-0909\")))",
  "Description": "Mathematical and statistical tools for computational\nbiology in drug discovery. Functions are designed for high\nperformance. Implements the hierarchical fuzzy multi-linkage\npartitioning method proposed by Huang et al. (2007)\n<doi:10.1186/gb-2007-8-9-r183>.",
  "License": "GPL-3",
  "URL": "https://github.com/bedapub/ribiosMath",
  "BugReports": "https://github.com/bedapub/ribiosMath/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-17 08:23:59 UTC",
    "User": "root"
  },
  "Author": "Jitao David Zhang [aut, cre, ctb] (ORCID:\n<https://orcid.org/0000-0002-3085-0909>)",
  "Maintainer": "Jitao David Zhang <jitao_david.zhang@roche.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-02-17 22:00:02 UTC",
  "RemoteUrl": "https://github.com/cran/ribiosMath",
  "RemoteRef": "HEAD",
  "RemoteSha": "0cb3a53d577f99f8b36a71fbdc7ff23139a656bf",
  "MD5sum": "a9b4119abc746b0f12b335b679e30f47",
  "_user": "cran",
  "_type": "src",
  "_file": "ribiosMath_1.2.0.tar.gz",
  "_fileid": "6cf9fee1108ec184dd35d7f9887801e3d171c177349ffc84824c5e70a35de2a3",
  "_filesize": 160581,
  "_sha256": "6cf9fee1108ec184dd35d7f9887801e3d171c177349ffc84824c5e70a35de2a3",
  "_created": "2026-06-17T08:23:59.000Z",
  "_published": "2026-06-17T08:27:05.856Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 81850820566,
      "time": 117,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7689899142"
    },
    {
      "job": 81850820579,
      "time": 131,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7689907477"
    },
    {
      "job": 81850820543,
      "time": 130,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7689904578"
    },
    {
      "job": 81850820602,
      "time": 124,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7689902476"
    },
    {
      "job": 81850260986,
      "time": 188,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7689854739"
    },
    {
      "job": 81850820603,
      "time": 117,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7689899307"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/27675646836",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/ribiosMath",
  "_commit": {
    "id": "0cb3a53d577f99f8b36a71fbdc7ff23139a656bf",
    "author": "Jitao David Zhang <jitao_david.zhang@roche.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.2.0\n",
    "time": 1771365602
  },
  "_maintainer": {
    "name": "Jitao David Zhang",
    "email": "jitao_david.zhang@roche.com",
    "login": "accio",
    "description": "A Computational Biologist in Drug Discovery",
    "uuid": 1397024,
    "orcid": "0000-0002-3085-0909"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-08",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.2.0",
      "date": "2026-02-17"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "accio",
      "count": 1,
      "uuid": 1397024
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 609,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 117,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ribiosMath"
  },
  "_devurl": "https://github.com/bedapub/ribiosmath",
  "_searchresults": 8,
  "_topics": [
    "openblas",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/ribiosMath.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bedapub/ribiosmath",
  "_realowner": "bedapub",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.2.0",
      "date": "2026-02-17"
    }
  ],
  "_exports": [
    "colKappa",
    "cosdist",
    "cossim",
    "davidClustering_kappa",
    "empval",
    "rowKappa",
    "simulate_from_density",
    "tfidf"
  ],
  "_help": [
    {
      "page": "colKappa",
      "title": "Calculate column-wise kappa statistics of a matrix",
      "concept": [
        "kappa functions"
      ],
      "topics": [
        "colKappa"
      ]
    },
    {
      "page": "cosdist",
      "title": "Calculate the cosine distance between two vectors (matrices)",
      "topics": [
        "cosdist"
      ]
    },
    {
      "page": "cossim",
      "title": "Calculate the cosine similarity between two vectors (matrices)",
      "topics": [
        "cossim"
      ]
    },
    {
      "page": "davidClustering_kappa",
      "title": "Cluster rows of a Kappa-statistic-matrix by the hierarhical fuzzy multi-linkage partitioning method proposed by DAVID",
      "topics": [
        "davidClustering_kappa"
      ]
    },
    {
      "page": "davidClustering_kappa_R",
      "title": "Cluster rows of a Kappa-statistic-matrix by the hierarhical fuzzy multi-linkage partitioning method proposed by DAVID",
      "topics": [
        "davidClustering_kappa_R"
      ]
    },
    {
      "page": "empval",
      "title": "Get empirical p-value",
      "topics": [
        "empval"
      ]
    },
    {
      "page": "kappaSimp",
      "title": "Calculate column-wise kappa statistics of a matrix, using a simple procedure by going through the matrix and counting",
      "concept": [
        "kappa functions"
      ],
      "topics": [
        "kappaSimp"
      ]
    },
    {
      "page": "rowKappa",
      "title": "Calculate row-wise kappa statistics of a matrix",
      "concept": [
        "kappa functions"
      ],
      "topics": [
        "rowKappa"
      ]
    },
    {
      "page": "simulate_from_density",
      "title": "Simulate from density",
      "topics": [
        "simulate_from_density"
      ]
    },
    {
      "page": "tfidf",
      "title": "Calculate TF-IDF using a input matrix with terms in rows and documents in columns",
      "topics": [
        "tfidf"
      ]
    }
  ],
  "_readme": "https://github.com/cran/ribiosMath/raw/HEAD/README.md",
  "_rundeps": [
    "Rcpp",
    "RcppArmadillo"
  ],
  "_sysdeps": [
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 1.6989700043360187,
  "_indexed": false,
  "_nocasepkg": "ribiosmath",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://bedapub.r-universe.dev/ribiosMath",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-06-17T08:26:03.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "0cb3a53d577f99f8b36a71fbdc7ff23139a656bf",
      "fileid": "f507de9f7d57ce6f97a2f79cde2202d49a883e99976cf96dcaabe41ed3c76d0d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27675646836"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-06-17T08:26:22.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "0cb3a53d577f99f8b36a71fbdc7ff23139a656bf",
      "fileid": "c704213be46d27b55221aff20ec08d270524844e5442a5bcce3ca750d1668a99",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27675646836"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-06-17T08:26:17.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "0cb3a53d577f99f8b36a71fbdc7ff23139a656bf",
      "fileid": "7e80c311973dfb79f0f9e1b01543c03d2b8fb829877e65d076aa6fab0d2d7614",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27675646836"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-06-17T08:26:10.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "0cb3a53d577f99f8b36a71fbdc7ff23139a656bf",
      "fileid": "00faeca453e75f2c1d483a0664540d3a0882d64f861084a2208281f4c089529d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27675646836"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.0",
      "date": "2026-06-17T08:26:22.000Z",
      "arch": "emscripten",
      "commit": "0cb3a53d577f99f8b36a71fbdc7ff23139a656bf",
      "fileid": "300ed98afff12efcf1dcf839f8a80f990c1308b0020bf9cf750ca9c845abf508",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27675646836"
    }
  ]
}