{ "_id": "6a2694da24555f66ed51ce39", "Package": "regnet", "Type": "Package", "Title": "Network-Based Regularization for Generalized Linear Models", "Version": "1.0.2", "Authors@R": "c(\nperson(given = \"Jie\", family = \"Ren\", role = c(\"aut\", \"cre\"),\nemail = \"renjie0910@gmail.com\"),\nperson(given = c(\"Luann\", \"C.\"), family = \"Jung\", role = \"aut\"),\nperson(given = \"Yinhao\", family = \"Du\", role = \"aut\"),\nperson(given = \"Cen\", family = \"Wu\", role = \"aut\"),\nperson(given = \"Yu\", family = \"Jiang\", role = \"aut\"),\nperson(given = \"Junhao\", family = \"Liu\", role = \"aut\"))", "Maintainer": "Jie Ren ", "Description": "Network-based regularization has achieved success in\nvariable selection for high-dimensional biological data due to\nits ability to incorporate correlations among genomic features.\nThis package provides procedures of network-based variable\nselection for generalized linear models (Ren et al. (2017)\n and Ren et al.(2019)\n). Continuous, binary, and survival\nresponse are supported. Robust network-based methods are\navailable for continuous and survival responses.", "License": "GPL-2", "Encoding": "UTF-8", "LazyData": "true", "URL": "https://github.com/jrhub/regnet", "BugReports": "https://github.com/jrhub/regnet/issues", "RoxygenNote": "7.3.2", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-08 10:04:52 UTC", "User": "root" }, "Author": "Jie Ren [aut, cre], Luann C. Jung [aut], Yinhao Du [aut], Cen\nWu [aut], Yu Jiang [aut], Junhao Liu [aut]", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-02-10 01:56:33 UTC", "RemoteUrl": "https://github.com/cran/regnet", "RemoteRef": "HEAD", "RemoteSha": "77c400d7db90b195b744567c2580252c34a46285", "MD5sum": "c09facda968a2a9235c2067bc2ba4f1c", "_user": "cran", "_type": "src", "_file": "regnet_1.0.2.tar.gz", "_fileid": "6b2f75f49c7a4e68a6ae03c2603e80c747bfade62a875d66998779d53a85f512", "_filesize": 2649225, "_sha256": "6b2f75f49c7a4e68a6ae03c2603e80c747bfade62a875d66998779d53a85f512", "_created": "2026-06-08T10:04:52.000Z", "_published": "2026-06-08T10:09:30.398Z", "_distro": "noble", "_jobs": [ { "job": 80069676491, "time": 184, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7477227003" }, { "job": 80069676457, "time": 168, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7477220187" }, { "job": 80069676477, "time": 184, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7477227081" }, { "job": 80069676547, "time": 180, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7477224113" }, { "job": 80068938082, "time": 243, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7477158706" }, { "job": 80069676415, "time": 151, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7477213263" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27130172725", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/regnet", "_commit": { "id": "77c400d7db90b195b744567c2580252c34a46285", "author": "Jie Ren ", "committer": "cran-robot ", "message": "version 1.0.2\n", "time": 1739152593 }, "_maintainer": { "name": "Jie Ren", "email": "renjie0910@gmail.com", "login": "jrenstat", "description": "PhD in Statistics", "uuid": 8022299 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "glmnet", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "covr", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "jrenstat", "count": 1, "uuid": 8022299 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 191, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/regnet" }, "_mentions": 1, "_devurl": "https://github.com/jrhub/regnet", "_searchresults": 8, "_topics": [ "openblas", "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/regnet.html", "manual.pdf" ], "_homeurl": "https://github.com/jrenstat/regnet", "_realowner": "jrenstat", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2017-05-21" }, { "version": "0.1.1", "date": "2017-05-23" }, { "version": "0.2.0", "date": "2017-10-15" }, { "version": "0.3.0", "date": "2018-05-22" }, { "version": "0.4.0", "date": "2019-06-08" }, { "version": "1.0.0", "date": "2022-08-18" }, { "version": "1.0.1", "date": "2024-02-22" }, { "version": "1.0.2", "date": "2025-02-10" } ], "_exports": [ "cv.regnet", "regnet" ], "_datasets": [ { "name": "rgn.htr", "title": "Example datasets for demonstrating the features of regnet", "object": "HeteroExample", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "rgn.logi", "title": "Example datasets for demonstrating the features of regnet", "object": "LogisticExample", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "rgn.surv", "title": "Example datasets for demonstrating the features of regnet", "object": "SurvExample", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "rgn.tcga", "title": "Example datasets for demonstrating the features of regnet", "object": "ContExample", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "regnet-package", "title": "regnet: Network-Based Regularization for Generalized Linear Models", "topics": [ "regnet-package" ] }, { "page": "cv.regnet", "title": "k-folds cross-validation for regnet", "topics": [ "cv.regnet" ] }, { "page": "plot.regnet", "title": "plot a regnet object", "topics": [ "plot.regnet" ] }, { "page": "print.cv.regnet", "title": "print a cv.regnet object", "topics": [ "print.cv.regnet" ] }, { "page": "print.regnet", "title": "print a regnet object", "topics": [ "print.regnet" ] }, { "page": "regnet", "title": "fit a regression for given lambda with network-based regularization", "topics": [ "regnet" ] }, { "page": "rgn", "title": "Example datasets for demonstrating the features of regnet", "topics": [ "rgn", "rgn.htr", "rgn.logi", "rgn.surv", "rgn.tcga" ] } ], "_readme": "https://github.com/cran/regnet/raw/HEAD/README.md", "_rundeps": [ "cli", "codetools", "cpp11", "foreach", "glmnet", "glue", "igraph", "iterators", "lattice", "lifecycle", "magrittr", "Matrix", "pkgconfig", "Rcpp", "RcppArmadillo", "RcppEigen", "rlang", "shape", "survival", "vctrs" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 1.6989700043360187, "_indexed": false, "_nocasepkg": "regnet", "_universes": [ "cran" ], "_indexurl": "https://jrenstat.r-universe.dev/regnet", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.2", "date": "2026-06-08T10:07:55.000Z", "distro": "noble", "arch": "aarch64", "commit": "77c400d7db90b195b744567c2580252c34a46285", "fileid": "87530d48332f0a7e18ea4b17db5ab26e298a6d21befb8d93e5554935c9b615c8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27130172725" }, { "r": "4.7.0", "os": "linux", "version": "1.0.2", "date": "2026-06-08T10:07:44.000Z", "distro": "noble", "arch": "x86_64", "commit": "77c400d7db90b195b744567c2580252c34a46285", "fileid": "27d433123675b1bbb16e841ad1f219fe200b78c3a01bab64f2dc655b08dc0ecf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27130172725" }, { "r": "4.6.0", "os": "linux", "version": "1.0.2", "date": "2026-06-08T10:07:56.000Z", "distro": "noble", "arch": "aarch64", "commit": "77c400d7db90b195b744567c2580252c34a46285", "fileid": "6ea5ad6e0a36126c615ea2baa21e4362be67d9e18e813dd84ab652a9e661823c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27130172725" }, { "r": "4.6.0", "os": "linux", "version": "1.0.2", "date": "2026-06-08T10:07:52.000Z", "distro": "noble", "arch": "x86_64", "commit": "77c400d7db90b195b744567c2580252c34a46285", "fileid": "193ce54b65630354e535828be0b103ea2eefbf4ff6f275693bdb22adb7ea40cb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27130172725" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.2", "date": "2026-06-08T10:07:56.000Z", "arch": "emscripten", "commit": "77c400d7db90b195b744567c2580252c34a46285", "fileid": "e4aba878dea03a265f8eed4dde5b0715878cebb9dcb148527e8e54edc74ddf19", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27130172725" } ] }