{
  "_id": "6a623a5435834fefe99ecb63",
  "Package": "rBahadur",
  "Title": "Assortative Mating Simulation and Multivariate Bernoulli\nVariates",
  "Version": "1.1.0",
  "Authors@R": "c(person(\"Richard\", \"Border\",\nemail= \"border.richard@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6293-2968\")),\nperson(\"Osman\", \"Malik\", , \"oamalik@lbl.gov\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-4477-481X\")))",
  "Description": "Simulation of phenotype / genotype data under assortative\nand disassortative mating. Includes functions for generating\nBahadur order-2 multivariate Bernoulli variables with general\nand diagonal-plus-low-rank correlation structures, and for\nwriting simulated genotypes to disk as binary int8 or PLINK bed\nfiles. Further details are provided in: Border and Malik (2023)\n<doi:10.1186/s12859-023-05442-6>.",
  "URL": "https://github.com/border-lab/rBahadur",
  "BugReports": "https://github.com/border-lab/rBahadur/issues",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "SystemRequirements": "curl, gzip (providing zcat), awk",
  "RoxygenNote": "7.3.1",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-23 15:56:27 UTC",
    "User": "root"
  },
  "Author": "Richard Border [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6293-2968>), Osman Malik [aut]\n(ORCID: <https://orcid.org/0000-0003-4477-481X>)",
  "Maintainer": "Richard Border <border.richard@gmail.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-07-23 11:00:14 UTC",
  "RemoteUrl": "https://github.com/cran/rBahadur",
  "RemoteRef": "HEAD",
  "RemoteSha": "35a59a24b967810081f0778a9cc1a67031d999b5",
  "_user": "cran",
  "_type": "src",
  "_file": "rBahadur_1.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/48f763afd56fef54ba10e85b8f7c2ef762f91c9cb2b0a2cc598edb7bb6341696",
  "_filesize": 317566,
  "_sha256": "48f763afd56fef54ba10e85b8f7c2ef762f91c9cb2b0a2cc598edb7bb6341696",
  "_expires": "2026-10-31T15:59:14.000Z",
  "_created": "2026-07-23T15:56:27.000Z",
  "_published": "2026-07-23T15:59:16.160Z",
  "_jobs": [
    {
      "job": 89259848346,
      "time": 112,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8570062028"
    },
    {
      "job": 89259848351,
      "time": 122,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8570067551"
    },
    {
      "job": 89258912113,
      "time": 212,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8570001446"
    },
    {
      "job": 89259848253,
      "time": 93,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8570052979"
    },
    {
      "job": 89259848277,
      "time": 87,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8570051207"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/30022554708",
  "_status": "success",
  "_upstream": "https://github.com/cran/rBahadur",
  "_commit": {
    "id": "35a59a24b967810081f0778a9cc1a67031d999b5",
    "author": "Richard Border <border.richard@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1.0\n",
    "time": 1784804414
  },
  "_maintainer": {
    "name": "Richard Border",
    "email": "border.richard@gmail.com",
    "login": "rborder",
    "description": "Assistant Professor of Computational Biology",
    "uuid": 25067733,
    "orcid": "0000-0002-6293-2968"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-30",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.1.0",
      "date": "2026-07-23"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "rborder",
      "count": 4,
      "uuid": 25067733
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 623,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 130,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rBahadur"
  },
  "_devurl": "https://github.com/border-lab/rbahadur",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/rBahadur.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/border-lab/rbahadur",
  "_realowner": "border-lab",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.9.1",
      "date": "2022-11-03"
    },
    {
      "version": "0.9.2",
      "date": "2023-07-16"
    },
    {
      "version": "1.0.0",
      "date": "2023-08-25"
    },
    {
      "version": "1.1.0",
      "date": "2026-07-23"
    }
  ],
  "_exports": [
    "am_covariance_structure",
    "am_mosaic",
    "am_simulate",
    "download_1kg_panel",
    "h2_eq",
    "kg_reference",
    "rb_dplr",
    "rb_unstr",
    "rbahadur_cli_path",
    "rbahadur_main",
    "read_genotypes",
    "rg_eq",
    "vcf_to_panel",
    "vg_eq",
    "write_genotypes"
  ],
  "_help": [
    {
      "page": "am_covariance_structure",
      "title": "Compute Diagonal plus Low Rank equilibrium covariance structure",
      "topics": [
        "am_covariance_structure"
      ]
    },
    {
      "page": "am_equilibrium_parameters",
      "title": "Functions to compute equilibrium parameters under assortative mating",
      "topics": [
        "am_equilibrium_parameters",
        "h2_eq",
        "rg_eq",
        "vg_eq"
      ]
    },
    {
      "page": "am_mosaic",
      "title": "Simulate equilibrium assortative mating with realistic local LD",
      "topics": [
        "am_mosaic"
      ]
    },
    {
      "page": "am_simulate",
      "title": "Simulate genotype/phenotype data under equilibrium univariate AM.",
      "topics": [
        "am_simulate"
      ]
    },
    {
      "page": "download_1kg_panel",
      "title": "Download a 1000 Genomes region and build a reference panel",
      "topics": [
        "download_1kg_panel"
      ]
    },
    {
      "page": "kg_reference",
      "title": "Load the bundled 1000 Genomes reference panel",
      "topics": [
        "kg_reference"
      ]
    },
    {
      "page": "rb_dplr",
      "title": "Binary random variates with Diagonal Plus Low Rank (dplr) correlations",
      "topics": [
        "rb_dplr"
      ]
    },
    {
      "page": "rb_unstr",
      "title": "Binary random variates with unstructured correlations",
      "topics": [
        "rb_unstr"
      ]
    },
    {
      "page": "rbahadur_cli_path",
      "title": "Path to the 'rbahadur' command line script",
      "topics": [
        "rbahadur_cli_path"
      ]
    },
    {
      "page": "rbahadur_main",
      "title": "Run the 'rbahadur' command line interface",
      "topics": [
        "rbahadur_main"
      ]
    },
    {
      "page": "read_genotypes",
      "title": "Read genotypes from a binary file written by 'write_genotypes()'",
      "topics": [
        "read_genotypes"
      ]
    },
    {
      "page": "vcf_to_panel",
      "title": "Build a reference panel from a VCF",
      "topics": [
        "vcf_to_panel"
      ]
    },
    {
      "page": "write_genotypes",
      "title": "Write genotypes to a binary file",
      "topics": [
        "write_genotypes"
      ]
    }
  ],
  "_pkglogo": "https://github.com/cran/rBahadur/raw/HEAD/man/figures/logo.svg",
  "_readme": "https://github.com/cran/rBahadur/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "local-ld.Rmd",
      "filename": "local-ld.html",
      "title": "Combining assortative mating with realistic local LD",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The problem",
        "How it works",
        "A worked example",
        "The assortative mating structure is preserved exactly",
        "Local LD is preserved too",
        "Choosing the number of causal variants",
        "Working at realistic scale",
        "Limitations"
      ],
      "created": "2026-07-23 11:00:14",
      "modified": "2026-07-23 11:00:14",
      "commits": 1
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": false,
  "_nocasepkg": "rbahadur",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://border-lab.r-universe.dev/rBahadur",
  "_previous": "1.0.0",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-23T15:58:23.000Z",
      "distro": "resolute",
      "commit": "35a59a24b967810081f0778a9cc1a67031d999b5",
      "fileid": "https://r2.ropensci.org/fa56636481fe9cb22f146053b1cd3f9f4272c98b82d8227399070b512ab35414",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30022554708"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-07-23T15:58:33.000Z",
      "distro": "resolute",
      "commit": "35a59a24b967810081f0778a9cc1a67031d999b5",
      "fileid": "https://r2.ropensci.org/19a087447ae01ecf4cadb1aa89e4b2c6b4fd83c65e286b8847239a3fceebaddb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30022554708"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.0",
      "date": "2026-07-23T15:58:21.000Z",
      "commit": "35a59a24b967810081f0778a9cc1a67031d999b5",
      "fileid": "https://r2.ropensci.org/86000d78208e8f228ff33e75f0035f9eba51225f177c4735bcc6f7563295d389",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30022554708"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-07-23T15:57:53.000Z",
      "commit": "35a59a24b967810081f0778a9cc1a67031d999b5",
      "fileid": "https://r2.ropensci.org/db1b63ee469e4af9e53d68abda487ee0ab62254a53d268123c0d745995448158",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30022554708"
    }
  ]
}