{ "_id": "6a0f6903acfb0bcc41c5dcd6", "Package": "rADA", "Title": "Statistical Analysis and Cut-Point Determination of Immunoassays", "Version": "1.1.9", "Authors@R": "c(\nperson(\"Emma\", \"Gail\", email = \"emmahelengail@gmail.com\", role = c(\"cre\", \"aut\")),\nperson(\"Lidija\", \"Turkovic\", email = \"lidijat@gmail.com\", role = \"aut\"),\nperson(\"Anil\", \"Dolgun\", email = \"anil.dolgun@csl.com.au\", role=\"ctb\"),\nperson(\"Monther\", \"Alhamdoosh\", email = \"monther.alhamdoosh@csl.com.au\", role=\"ctb\"),\nperson(\"Milica\", \"Ng\", email = \"milica.ng@csl.com.au\", role=\"ctb\"))", "Description": "Systematically transform immunoassay data, evaluate if the\ndata is normally distributed, and pick the right method for cut\npoint determination based on that evaluation. This package can\nalso produce plots that are needed for reports, so data\nanalysis and visualization can be done easily.", "Maintainer": "Emma Gail ", "VignetteBuilder": "knitr", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.1.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-21 08:57:42 UTC", "User": "root" }, "Author": "Emma Gail [cre, aut], Lidija Turkovic [aut], Anil Dolgun [ctb],\nMonther Alhamdoosh [ctb], Milica Ng [ctb]", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2021-03-23 18:40:06 UTC", "RemoteUrl": "https://github.com/cran/rADA", "RemoteRef": "HEAD", "RemoteSha": "10b8e8e44f674f528b1d09ea3078103834f8e7db", "MD5sum": "3369e6efb0205a6c054f34d96c736ca5", "_user": "cran", "_type": "src", "_file": "rADA_1.1.9.tar.gz", "_fileid": "660e3cbab1ec041f744f2c950b9b7cb204cacbdd476fa2b9335239c11cf1ad25", "_filesize": 5425709, "_sha256": "660e3cbab1ec041f744f2c950b9b7cb204cacbdd476fa2b9335239c11cf1ad25", "_created": "2026-05-21T08:57:42.000Z", "_published": "2026-05-21T20:20:19.796Z", "_distro": "noble", "_jobs": [ { "job": 77260824909, "time": 144, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7131532567" }, { "job": 77260824947, "time": 131, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7131528179" }, { "job": 77260824461, "time": 228, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7131480677" }, { "job": 77260824185, "time": 147, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7146285457" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26215919035", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/rADA", "_commit": { "id": "10b8e8e44f674f528b1d09ea3078103834f8e7db", "author": "Emma Gail ", "committer": "cran-robot ", "message": "version 1.1.9\n", "time": 1616524806 }, "_maintainer": { "name": "Emma Gail", "email": "emmahelengail@gmail.com" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "lme4", "version": ">= 1.1.21", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.2.1", "role": "Imports" }, { "package": "matrixStats", "version": ">= 0.56.0", "role": "Imports" }, { "package": "reshape2", "version": ">= 1.4.3", "role": "Imports" }, { "package": "lmerTest", "version": ">= 3.1.0", "role": "Imports" }, { "package": "e1071", "version": ">= 1.7.2", "role": "Imports" }, { "package": "tidyr", "version": ">= 1.0.0", "role": "Imports" }, { "package": "stringr", "version": ">= 1.4.0", "role": "Imports" }, { "package": "dplyr", "version": ">= 0.8.3", "role": "Imports" }, { "package": "Hmisc", "version": ">= 4.3.0", "role": "Imports" }, { "package": "gridExtra", "version": ">= 2.3", "role": "Imports" }, { "package": "grid", "version": ">= 3.5.3", "role": "Imports" }, { "package": "stats", "version": ">= 3.5.3", "role": "Imports" }, { "package": "grDevices", "version": ">= 3.5.3", "role": "Imports" }, { "package": "utils", "version": ">= 3.5.3", "role": "Imports" }, { "package": "forestplot", "version": ">= 1.10", "role": "Imports" }, { "package": "methods", "version": ">= 3.5.3", "role": "Imports" }, { "package": "knitr", "version": ">= 1.29", "role": "Imports" }, { "package": "openxlsx", "version": ">= 4.2.2", "role": "Imports" }, { "package": "car", "version": ">= 3.0", "role": "Imports" }, { "package": "markdown", "version": ">= 1.1", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 238, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rADA" }, "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/rADA.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.1.9", "date": "2021-03-23" } ], "_exports": [ "assayMelt", "calcCvStats", "calcScpValues", "evalBoxplot", "evalNorm", "excludeOutliers", "importAssay", "mixedModel", "scp", "scpForestPlot" ], "_datasets": [ { "name": "lognormAssay", "title": "Simulated Lognormal Dataset", "object": "lognormAssay", "class": [ "data.frame" ], "fields": [ "ID", "Lot", "D1_Op1_1", "D1_Op1_2", "D1_Op1_3", "D1_Op2_1", "D1_Op2_2", "D1_Op2_3", "D2_Op1_1", "D2_Op1_2", "D2_Op1_3", "D2_Op2_1", "D2_Op2_2", "D2_Op2_3", "D3_Op1_1", "D3_Op1_2", "D3_Op1_3", "D3_Op2_1", "D3_Op2_2", "D3_Op2_3" ], "rows": 100, "table": true, "tojson": true } ], "_help": [ { "page": "assayMelt", "title": "Melt Assay Dataset", "topics": [ "assayMelt" ] }, { "page": "calcCvStats", "title": "Calculate Coefficient of Variation", "topics": [ "calcCvStats", "calcCvStats,ImmunoAssay-method" ] }, { "page": "calcScpValues", "title": "Calculate screening cut point values for scp()", "topics": [ "calcScpValues" ] }, { "page": "evalBoxplot", "title": "Evaluate the Assays with Boxplots", "topics": [ "evalBoxplot", "evalBoxplot,ImmunoAssay-method" ] }, { "page": "evalNorm", "title": "Normality Evaluation", "topics": [ "evalNorm", "evalNorm,ImmunoAssay-method" ] }, { "page": "excludeOutliers", "title": "Exclude Outliers from Melted Assay Dataframe", "topics": [ "excludeOutliers" ] }, { "page": "ImmunoAssay-class", "title": "Define ImmunoAssay class", "topics": [ "ImmunoAssay", "ImmunoAssay-class" ] }, { "page": "importAssay", "title": "Import assay as ImmunoAssay object", "topics": [ "importAssay" ] }, { "page": "lognormAssay", "title": "Simulated Lognormal Dataset", "topics": [ "lognormAssay" ] }, { "page": "mixedModel", "title": "Mixed model wrapper for assay dataframe", "topics": [ "mixedModel" ] }, { "page": "scp", "title": "Calculate screening cut point", "topics": [ "scp", "scp,ImmunoAssay-method" ] }, { "page": "scpForestPlot", "title": "Generate forest plot of SCP values", "topics": [ "scpForestPlot", "scpForestPlot,ImmunoAssay-method" ] } ], "_rundeps": [ "abind", "backports", "base64enc", "boot", "broom", "bslib", "cachem", "car", "carData", "checkmate", "class", "cli", "cluster", "colorspace", "cowplot", "cpp11", "data.table", "Deriv", "digest", "doBy", "dplyr", "e1071", "evaluate", "farver", "fastmap", "fontawesome", "forecast", "foreign", "forestplot", "Formula", "fracdiff", "fs", "generics", "ggplot2", "glue", "gridExtra", "gtable", "highr", "Hmisc", "htmlTable", "htmltools", "htmlwidgets", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "lme4", "lmerTest", "lmtest", "magrittr", "MASS", "Matrix", "MatrixModels", "matrixStats", "memoise", "mgcv", "microbenchmark", "mime", "minqa", "modelr", "nlme", "nloptr", "nnet", "numDeriv", "openxlsx", "pbkrtest", "pillar", "pkgconfig", "plyr", "proxy", "purrr", "quantreg", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "reshape2", "rlang", "rmarkdown", "rpart", "rstudioapi", "S7", "sass", "scales", "SparseM", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "timeDate", "tinytex", "urca", "utf8", "vctrs", "viridisLite", "withr", "xfun", "yaml", "zip", "zoo" ], "_vignettes": [ { "source": "rada_vignette.Rmd", "filename": "rada_vignette.html", "title": "Screening Cut Point Determination with rADA", "author": "Emma Gail, Lidija Turkovic, Anil Dolgun, Monther Alhamdoosh, and Milica Ng", "engine": "knitr::knitr", "headings": [ "Introduction", "Installation", "Load Libraries", "Read file", "Calculate Mean, SD, and CV%", "Boxplots of Days/Operators", "Evaluating the distribution of the dataset", "Normality Evaluation", "No Outlier Removal", "Outlier Removal", "Calculate Cut Point", "Forest Plot of Cut Points", "References", "Session Info" ], "created": "2021-03-23 18:40:06", "modified": "2021-03-23 18:40:06", "commits": 1 }, { "source": "rada_vignette_supplemental.Rmd", "filename": "rada_vignette_supplemental.html", "title": "Screening Cut Point Determination with rADA", "author": "Emma Gail, Lidija Turkovic, Anil Dolgun, Monther Alhamdoosh, and Milica Ng", "engine": "knitr::knitr", "headings": [ "Introduction", "Installation", "Load Libraries", "Read file", "Calculate Mean, SD, and CV%", "Boxplots of Days/Operators", "Evaluating the distribution of the dataset", "Normality Evaluation", "No Outlier Removal", "Outlier Removal", "Calculate Cut Point", "Forest Plot of Cut Points", "Analysis of Variance", "The effect of different methodologies on the cut point estimation", "References", "Session Info" ], "created": "2021-03-23 18:40:06", "modified": "2021-03-23 18:40:06", "commits": 1 } ], "_score": 2.3010299956639813, "_indexed": true, "_nocasepkg": "rada", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.9", "date": "2026-05-21T09:00:06.000Z", "distro": "noble", "commit": "10b8e8e44f674f528b1d09ea3078103834f8e7db", "fileid": "7583a0cd9651df9b27f30071e4971a6d20fb878d1b17e1215e1a0d7452bc07ed", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/26215919035" }, { "r": "4.6.0", "os": "linux", "version": "1.1.9", "date": "2026-05-21T08:59:53.000Z", "distro": "noble", "commit": "10b8e8e44f674f528b1d09ea3078103834f8e7db", "fileid": "81f2cc77cf6064fc30bb5f07137e89aea934f9965adfbae80c9e370933f8ddf0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/26215919035" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.9", "date": "2026-05-21T20:19:58.000Z", "commit": "10b8e8e44f674f528b1d09ea3078103834f8e7db", "fileid": "067a6c18fb3b4d5f444355f6dc084c9c5bd87218d979cb6daf8eacbadfd6816d", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26215919035" } ] }