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  "Title": "Quick ATAC-Seq QC",
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  "Description": "A wrapper around the 'quaqc' program described in Tremblay\nand Questa (2024) <doi:10.1093/bioinformatics/btae649>. 'quaqc'\nallows for assay for transposase-accessible chromatin using\nsequencing (ATAC-seq) specific quality control and read\nfiltering of next-generation sequencing (NGS) data with minimal\nprocessing time and extremely low memory overhead. Any number\nof samples can be processed, using multiple threads if desired.\n'quaqc' outputs a comprehensive set of aligned read metrics,\nincluding alignment size, fragment size, percent duplicates,\nmapq scores, read depth, GC content, and others. Although\ndesigned for ATAC-seq data, 'quaqc' can also be used for other\nunspliced DNA sequencing experiments (such as chromatin\nimmunoprecipitation sequencing, or ChIP-seq) as many of the\nmetrics are related to general sequencing quality. This R\npackage also provides additional utilities for custom analyses\nand plotting of 'quaqc' results.",
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  "Author": "Benjamin Jean-Marie Tremblay [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7441-2951>)",
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