{ "_id": "6a2279facd65a98ecbd4ca9b", "Package": "prevalence", "Type": "Package", "Title": "Tools for Prevalence Assessment Studies", "Version": "0.4.1", "Date": "2022-06-03", "Authors@R": "c(person(\"Brecht\", \"Devleesschauwer\",\nrole = c(\"aut\", \"cre\"), email = \"brechtdv@gmail.com\"),\nperson(\"Paul\", \"Torgerson\", role = \"aut\"),\nperson(\"Johannes\", \"Charlier\", role = \"aut\"),\nperson(\"Bruno\", \"Levecke\", role = \"aut\"),\nperson(\"Nicolas\", \"Praet\", role = \"aut\"),\nperson(\"Sophie\", \"Roelandt\", role = \"aut\"),\nperson(\"Suzanne\", \"Smit\", role = \"aut\"),\nperson(\"Pierre\", \"Dorny\", role = \"aut\"),\nperson(\"Dirk\", \"Berkvens\", role = \"aut\"),\nperson(\"Niko\", \"Speybroeck\", role = \"aut\"))", "Author": "Brecht Devleesschauwer [aut, cre], Paul Torgerson [aut],\nJohannes Charlier [aut], Bruno Levecke [aut], Nicolas Praet\n[aut], Sophie Roelandt [aut], Suzanne Smit [aut], Pierre Dorny\n[aut], Dirk Berkvens [aut], Niko Speybroeck [aut]", "Maintainer": "Brecht Devleesschauwer ", "BugReports": "https://github.com/brechtdv/prevalence/issues", "Description": "The prevalence package provides Frequentist and Bayesian\nmethods for prevalence assessment studies. IMPORTANT: the\ntruePrev functions in the prevalence package call on JAGS (Just\nAnother Gibbs Sampler), which therefore has to be available on\nthe user's system. JAGS can be downloaded from\n.", "SystemRequirements": "JAGS (>= 4.0.0) (see\nhttps://mcmc-jags.sourceforge.io/)", "License": "GPL (>= 2)", "URL": "http://prevalence.cbra.be/", "LazyLoad": "yes", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-05 07:23:09 UTC", "User": "root" }, "Config/pak/sysreqs": "jags", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2022-06-03 20:20:02 UTC", "RemoteUrl": "https://github.com/cran/prevalence", "RemoteRef": "HEAD", "RemoteSha": "500c652408457f45271ac1ea4fdc0c22b38974d6", "MD5sum": "61e437ea99aa67ff91ebdc2c5bef181d", "_user": "cran", "_type": "src", "_file": "prevalence_0.4.1.tar.gz", "_fileid": "41e95375d877a9be613cd67d12f429c0e47469b8a1775f893abbd3bf63e84dd9", "_filesize": 305452, "_sha256": "41e95375d877a9be613cd67d12f429c0e47469b8a1775f893abbd3bf63e84dd9", "_created": "2026-06-05T07:23:09.000Z", "_published": "2026-06-05T07:25:46.353Z", "_distro": "noble", "_jobs": [ { "job": 79682791558, "time": 109, "config": 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{ "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "coda", "role": "Imports" }, { "package": "rjags", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 3, "_contributors": [ { "user": "brechtdv", "count": 2, "uuid": 3698720 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 338, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/prevalence" }, "_mentions": 8, "_devurl": "https://github.com/brechtdv/prevalence", "_searchresults": 52, "_topics": [ "jags", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", 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parameters of a Beta distribution based on expert information", "topics": [ "betaExpert", "plot.betaExpert", "print.betaExpert" ] }, { "page": "betaPERT", "title": "Calculate the parameters of a Beta-PERT distribution", "topics": [ "betaPERT", "plot.betaPERT", "print.betaPERT" ] }, { "page": "convert-methods", "title": "Methods for Function 'as.matrix' in Package 'prevalence'", "topics": [ "as.matrix,prev-method", "as.matrix-methods", "convert-methods" ] }, { "page": "define", "title": "Definition of 'truePrevMulti' and 'truePrevMulti2' model", "topics": [ "define_prior", "define_prior2", "define_x" ] }, { "page": "plot-methods", "title": "Methods for Function 'plot' in Package 'prevalence'", "topics": [ "plot,prev,ANY-method", "plot,prev-method", "plot-methods" ] }, { "page": "plot-methods-coda", "title": "Plotting functions from package 'coda'", "topics": [ "autocorr.plot,prev-method", "autocorr.plot-methods", "densplot,prev-method", "densplot-methods", "gelman.plot,prev-method", "gelman.plot-methods", "plot-methods-coda", "traceplot,prev-method", "traceplot-methods" ] }, { "page": "prev-class", "title": "Class '\"prev\"'", "topics": [ "prev-class" ] }, { "page": "print-methods", "title": "Methods for Function 'print' in Package 'prevalence'", "topics": [ "print,prev-method", "print-methods" ] }, { "page": "propCI", "title": "Calculate confidence intervals for prevalences and other proportions", "topics": [ "propCI" ] }, { "page": "show-methods", "title": "Methods for Function 'show' in Package 'prevalence'", "topics": [ "show,prev-method", "show-methods" ] }, { "page": "summary-methods", "title": "Methods for Function 'summary' in Package 'prevalence'", "topics": [ "summary,prev-method", "summary-methods" ] }, { "page": "truePrev", "title": "Estimate true prevalence from individuals samples", "topics": [ "truePrev" ] }, { "page": "truePrevMulti", "title": "Estimate true prevalence from individuals samples using multiple tests - conditional probability scheme", "topics": [ "truePrevMulti" ] }, { "page": "truePrevMulti2", "title": "Estimate true prevalence from individuals samples using multiple tests - covariance scheme", "topics": [ "truePrevMulti2" ] }, { "page": "truePrevPools", "title": "Estimate true prevalence from pooled samples", "topics": [ "truePrevPools" ] } ], "_readme": "https://github.com/cran/prevalence/raw/HEAD/README.md", "_rundeps": [ "coda", "lattice", "rjags" ], "_sysdeps": [ { "shlib": "libjags", "package": "jags", "headers": "jags", "source": "jags", "version": "4.3.2-2.2404.0", "name": "jags", "homepage": "https://mcmc-jags.sourceforge.io", "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler. It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary." }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 3.7951845896824237, "_indexed": false, "_nocasepkg": "prevalence", "_universes": [ "cran" ], "_indexurl": "https://brechtdv.r-universe.dev/prevalence", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.4.1", "date": "2026-06-05T07:25:03.000Z", "distro": "noble", "commit": "500c652408457f45271ac1ea4fdc0c22b38974d6", "fileid": "6766c5f00741f48c1dc1f3264eea7d6eabe27b0f3acf0ed7719a83b78ccc2b51", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/27001180697" }, { "r": "4.6.0", "os": "linux", "version": "0.4.1", "date": "2026-06-05T07:25:09.000Z", "distro": "noble", "commit": "500c652408457f45271ac1ea4fdc0c22b38974d6", "fileid": "8b539888ecfa00461d833cbe442755ae463abefba07e1fb13c7ea525017fe6f2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/27001180697" }, { "r": "4.6.0", "os": "wasm", "version": "0.4.1", "date": "2026-06-05T07:25:06.000Z", "commit": "500c652408457f45271ac1ea4fdc0c22b38974d6", "fileid": "029ca43cdeff05c91af3d9f09ef89379dc54cd1b61c0efdce3fd58f9b7fe0365", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27001180697" } ] }