{
  "_id": "6a49b363dbd0482285eb5ac5",
  "Package": "pointcoral",
  "Title": "Local Point-Count Processing for Coral Photoquadrats",
  "Version": "0.1.0",
  "Authors@R": "person(\"Elvin\", \"Cordero\", email = \"elvin.cordero@seamountgeo.com\", role = c(\"aut\", \"cre\"))",
  "Description": "Imports Coral Point Count with Excel extensions (CPCe)\npoint-count annotations and related exported tables,\nstandardizes labels with a user-supplied crosswalk, creates\necological cover summaries, writes quality-control overlays,\nand exports machine-learning-ready point labels, image patches,\nsparse masks, and train/validation/test splits. The package is\nfully local and does not depend on third-party web platforms,\nuser accounts, or other closed services. CPCe methods are\ndescribed by Kohler and Gill (2006) \"Coral Point Count with\nExcel extensions (CPCe): A Visual Basic program for the\ndetermination of coral and substrate coverage using random\npoint count methodology\" <doi:10.1016/j.cageo.2005.11.009>.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/el-cordero/pointcoral",
  "BugReports": "https://github.com/el-cordero/pointcoral/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-19 16:43:53 UTC",
    "User": "root"
  },
  "Author": "Elvin Cordero [aut, cre]",
  "Maintainer": "Elvin Cordero <elvin.cordero@seamountgeo.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-06-19 11:50:02 UTC",
  "RemoteUrl": "https://github.com/cran/pointcoral",
  "RemoteRef": "HEAD",
  "RemoteSha": "8d43873f1d9e02234e605d8652aa82e8c9d56423",
  "_user": "cran",
  "_type": "src",
  "_file": "pointcoral_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/d43c1a0bf4bfafa109bd28eaee8a257ccc82abcb75630e7f04a87a7a9869661a",
  "_filesize": 2239003,
  "_sha256": "d43c1a0bf4bfafa109bd28eaee8a257ccc82abcb75630e7f04a87a7a9869661a",
  "_expires": "2026-10-13T01:29:06.000Z",
  "_created": "2026-06-19T16:43:53.000Z",
  "_published": "2026-07-05T01:29:07.854Z",
  "_jobs": [
    {
      "job": 85182547717,
      "time": 153,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7754723381"
    },
    {
      "job": 85182547824,
      "time": 137,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7754719182"
    },
    {
      "job": 85182547564,
      "time": 230,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7754681243"
    },
    {
      "job": 85182547871,
      "time": 141,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7754720137"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/27837819518",
  "_status": "success",
  "_upstream": "https://github.com/cran/pointcoral",
  "_commit": {
    "id": "8d43873f1d9e02234e605d8652aa82e8c9d56423",
    "author": "Elvin Cordero <elvin.cordero@seamountgeo.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.0\n",
    "time": 1781869802
  },
  "_maintainer": {
    "name": "Elvin Cordero",
    "email": "elvin.cordero@seamountgeo.com"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "fs",
      "role": "Imports"
    },
    {
      "package": "janitor",
      "role": "Imports"
    },
    {
      "package": "magick",
      "role": "Imports"
    },
    {
      "package": "png",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "readr",
      "role": "Imports"
    },
    {
      "package": "readxl",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    },
    {
      "package": "glue",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "styler",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tidyr",
      "role": "Suggests"
    },
    {
      "package": "writexl",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-25",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.0",
      "date": "2026-06-19"
    }
  ],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 610,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pointcoral"
  },
  "_devurl": "https://github.com/el-cordero/pointcoral",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/pointcoral.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-06-19"
    }
  ],
  "_exports": [
    "check_crosswalk",
    "convert_cpce_coords",
    "export_coralnet_points",
    "export_segformer_sparse",
    "export_yolo_classification",
    "extract_point_patches",
    "make_class_lookup",
    "make_ml_points",
    "make_sparse_masks",
    "match_images",
    "plot_points_on_image",
    "qc_label_summary",
    "read_cpce_export",
    "read_cpce_file",
    "read_cpce_folder",
    "read_cpce_output_raw_tabs",
    "read_label_crosswalk",
    "run_pointcoral",
    "split_ml_points",
    "standardize_labels",
    "summarize_images",
    "summarize_points",
    "summarize_sites",
    "summarize_transects",
    "validate_points",
    "write_ml_points_csv",
    "write_pointcoral_dataset",
    "write_qc_overlays",
    "write_summary_tables"
  ],
  "_help": [
    {
      "page": "check_crosswalk",
      "title": "Check a label crosswalk against point data",
      "topics": [
        "check_crosswalk"
      ]
    },
    {
      "page": "convert_cpce_coords",
      "title": "Convert CPCe coordinates to image pixel coordinates",
      "topics": [
        "convert_cpce_coords"
      ]
    },
    {
      "page": "export_coralnet_points",
      "title": "Export point labels in a simple CoralNet-style CSV",
      "topics": [
        "export_coralnet_points"
      ]
    },
    {
      "page": "export_segformer_sparse",
      "title": "Export SegFormer-style sparse masks",
      "topics": [
        "export_segformer_sparse"
      ]
    },
    {
      "page": "export_yolo_classification",
      "title": "Export YOLO-style classification patches",
      "topics": [
        "export_yolo_classification"
      ]
    },
    {
      "page": "extract_point_patches",
      "title": "Extract point-centered image patches",
      "topics": [
        "extract_point_patches"
      ]
    },
    {
      "page": "make_class_lookup",
      "title": "Make a class lookup table",
      "topics": [
        "make_class_lookup"
      ]
    },
    {
      "page": "make_ml_points",
      "title": "Make an ML-ready point-label table",
      "topics": [
        "make_ml_points"
      ]
    },
    {
      "page": "make_sparse_masks",
      "title": "Create sparse semantic segmentation masks from point labels",
      "topics": [
        "make_sparse_masks"
      ]
    },
    {
      "page": "match_images",
      "title": "Match CPCe point rows to image files",
      "topics": [
        "match_images"
      ]
    },
    {
      "page": "plot_points_on_image",
      "title": "Plot CPCe points on an image",
      "topics": [
        "plot_points_on_image"
      ]
    },
    {
      "page": "qc_label_summary",
      "title": "Summarize point-label QC issues",
      "topics": [
        "qc_label_summary"
      ]
    },
    {
      "page": "read_cpce_export",
      "title": "Read a CPCe CSV or Excel export",
      "topics": [
        "read_cpce_export"
      ]
    },
    {
      "page": "read_cpce_file",
      "title": "Read one CPCe '.cpc' file",
      "topics": [
        "read_cpce_file"
      ]
    },
    {
      "page": "read_cpce_folder",
      "title": "Read CPCe files and exports from a folder",
      "topics": [
        "read_cpce_folder"
      ]
    },
    {
      "page": "read_cpce_output_raw_tabs",
      "title": "Read _raw sheets from a CPCe output workbook",
      "topics": [
        "read_cpce_output_raw_tabs"
      ]
    },
    {
      "page": "read_label_crosswalk",
      "title": "Read a label crosswalk",
      "topics": [
        "read_label_crosswalk"
      ]
    },
    {
      "page": "run_pointcoral",
      "title": "Run the full pointcoral workflow from folders",
      "topics": [
        "run_pointcoral"
      ]
    },
    {
      "page": "split_ml_points",
      "title": "Split ML points into train/validation/test sets",
      "topics": [
        "split_ml_points"
      ]
    },
    {
      "page": "standardize_labels",
      "title": "Standardize CPCe labels with a crosswalk",
      "topics": [
        "standardize_labels"
      ]
    },
    {
      "page": "summarize_images",
      "title": "Summarize points at image level",
      "topics": [
        "summarize_images"
      ]
    },
    {
      "page": "summarize_points",
      "title": "Summarize point counts and percent cover",
      "topics": [
        "summarize_points"
      ]
    },
    {
      "page": "summarize_sites",
      "title": "Summarize points at site level",
      "topics": [
        "summarize_sites"
      ]
    },
    {
      "page": "summarize_transects",
      "title": "Summarize points at transect level",
      "topics": [
        "summarize_transects"
      ]
    },
    {
      "page": "validate_points",
      "title": "Validate a point table",
      "topics": [
        "validate_points"
      ]
    },
    {
      "page": "write_ml_points_csv",
      "title": "Write ML point CSV files",
      "topics": [
        "write_ml_points_csv"
      ]
    },
    {
      "page": "write_pointcoral_dataset",
      "title": "Write a complete pointcoral dataset from imported points",
      "topics": [
        "write_pointcoral_dataset"
      ]
    },
    {
      "page": "write_qc_overlays",
      "title": "Write QC overlays for point annotations",
      "topics": [
        "write_qc_overlays"
      ]
    },
    {
      "page": "write_summary_tables",
      "title": "Write ecological summary tables",
      "topics": [
        "write_summary_tables"
      ]
    }
  ],
  "_pkglogo": "https://github.com/cran/pointcoral/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/cran/pointcoral/raw/HEAD/README.md",
  "_rundeps": [
    "bit",
    "bit64",
    "cellranger",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "curl",
    "dplyr",
    "fs",
    "generics",
    "glue",
    "hms",
    "janitor",
    "lifecycle",
    "lubridate",
    "magick",
    "magrittr",
    "pillar",
    "pkgconfig",
    "png",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "Rcpp",
    "readr",
    "readxl",
    "rematch",
    "rlang",
    "snakecase",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "tzdb",
    "utf8",
    "vctrs",
    "vroom",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "pointcoral-workflow.Rmd",
      "filename": "pointcoral-workflow.html",
      "title": "pointcoral workflow",
      "engine": "knitr::rmarkdown",
      "headings": [
        "1. Import CPCe data",
        "2. Match images",
        "3. Bare workflow from raw CPCe labels",
        "4. Optional: read a crosswalk table",
        "5. Optional: check unmapped labels",
        "6. Optional: apply label standardization",
        "7. Validate standardized points",
        "8. Create standardized ecological summary tables",
        "9. Create ML point-label CSVs",
        "10. Extract point patches",
        "11. Create sparse masks",
        "12. Create QC overlays",
        "Full workflow wrapper"
      ],
      "created": "2026-06-19 11:50:02",
      "modified": "2026-06-19 11:50:02",
      "commits": 1
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "pointcoral",
  "_universes": [
    "cran",
    "el-cordero"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-06-19T16:46:21.000Z",
      "distro": "noble",
      "commit": "8d43873f1d9e02234e605d8652aa82e8c9d56423",
      "fileid": "https://r2.ropensci.org/a742cdb154618444669fafa6ccaf8591e6b1f10082d97a8a88a918b08a9a7f8b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27837819518"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-06-19T16:46:06.000Z",
      "distro": "noble",
      "commit": "8d43873f1d9e02234e605d8652aa82e8c9d56423",
      "fileid": "https://r2.ropensci.org/c40de60c82b9875c1978c13c71d6caea6757c3aa7e35cf322d8795e409f07c9d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27837819518"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-06-19T16:46:42.000Z",
      "commit": "8d43873f1d9e02234e605d8652aa82e8c9d56423",
      "fileid": "https://r2.ropensci.org/2b7de8ba4e250293574bd3457e8a94b2976e1cadda1b62a2d7109531f458a13d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27837819518"
    }
  ]
}