{
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  "Package": "pcmabc",
  "Type": "Package",
  "Title": "Approximate Bayesian Computations for Phylogenetic Comparative\nMethods",
  "Version": "1.1.3",
  "Date": "2022-05-06",
  "Author": "Krzysztof Bartoszek <krzbar@protonmail.ch>, Pietro Lio'",
  "Maintainer": "Krzysztof Bartoszek <krzbar@protonmail.ch>",
  "Description": "Fits by ABC, the parameters of a stochastic process\nmodelling the phylogeny and evolution of a suite of traits\nfollowing the tree. The user may define an arbitrary Markov\nprocess for the trait and phylogeny. Importantly,\ntrait-dependent speciation models are handled and fitted to\ndata. See K. Bartoszek, P. Lio' (2019)\n<doi:10.5506/APhysPolBSupp.12.25>. The suggested geiger package\ncan be obtained from CRAN's archive\n<https://cran.r-project.org/src/contrib/Archive/geiger/>,\nsuggested to take latest version. Otherwise its required code\nis present in the pcmabc package. The suggested distory package\ncan be obtained from CRAN's archive\n<https://cran.r-project.org/src/contrib/Archive/distory/>,\nsuggested to take latest version.",
  "License": "GPL (>= 2) | file LICENCE",
  "LazyLoad": "yes",
  "Collate": "ABCdist.R ABCmessage.R ABC.R ABCupdate.R draw.R\nfrom_geiger_2_0_6_2_diversification.R getTipSample.R rates.R\nsimsde.R simtree.R",
  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Date/Publication": "2022-05-09 07:40:07 UTC",
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    "simulate_sde_on_branch"
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      "page": "pcmabc-package",
      "title": "Approximate Bayesian Computations for Phylogenetic Comparative Methods",
      "topics": [
        "pcmabc-package",
        "pcmabc"
      ]
    },
    {
      "page": "draw_phylproc",
      "title": "Plots the trajectory of the stochastic process that evolved on the phylogeny.",
      "topics": [
        "draw_phylproc"
      ]
    },
    {
      "page": "get_phylogenetic_sample",
      "title": "Retrieve contemporary sample",
      "topics": [
        "get_phylogenetic_sample"
      ]
    },
    {
      "page": "PCM_ABC",
      "title": "ABC estimation for PCMs",
      "topics": [
        "PCM_ABC"
      ]
    },
    {
      "page": "simulate_phenotype_on_tree",
      "title": "Simulate a stochastic process on top of a phylogeny.",
      "topics": [
        "simulate_phenotype_on_tree"
      ]
    },
    {
      "page": "simulate_phylproc",
      "title": "Simultaneously simulate a phylogeny and a trait evolving on it.",
      "topics": [
        "simulate_phylproc"
      ]
    },
    {
      "page": "simulate_sde_on_branch",
      "title": "Simulate a stochastic differential equation on a branch. using the 'yuima'",
      "topics": [
        "simulate_sde_on_branch"
      ]
    }
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