{
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  "Package": "pbatR",
  "Version": "2.2-17",
  "Date": "2024-01-22",
  "Title": "Pedigree/Family-Based Genetic Association Tests Analysis and\nPower",
  "Author": "Thomas Hoffmann <tjhoffm@gmail.com>, with contributions from\nChristoph Lange <clange@hsph.harvard.edu>",
  "Maintainer": "Thomas Hoffmann <tjhoffm@gmail.com>",
  "Description": "This R package provides power calculations via internal\nsimulation methods. The package also provides a frontend to the\nnow abandoned PBAT program (developed by Christoph Lange), and\nreads in the corresponding output and displays results and\nfigures when appropriate. The license of this R package itself\nis GPL. However, to have the program interact with the PBAT\nprogram for some functionality of the R package, users must\nadditionally obtain the PBAT program from Christoph Lange, and\naccept his license. Both the data analysis and power\ncalculations have command line and graphical interfaces using\ntcltk.",
  "License": "GPL",
  "URL": "https://academic.oup.com/bioinformatics/article-abstract/22/24/3103/208723",
  "LazyLoad": "true",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-31 09:35:55 UTC",
    "User": "root"
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  "Date/Publication": "2024-01-30 02:33:12 UTC",
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    "email": "tjhoffm@gmail.com"
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    "description": "Unofficial read-only mirror of all CRAN R packages"
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    "extra/citation.json",
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      "date": "2023-03-03"
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    "affectionPhe",
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    "as.ped",
    "as.pedlist",
    "as.phe",
    "as.pped",
    "c2bat",
    "fread.cped",
    "fread.ped",
    "fread.phe",
    "is.cped",
    "is.finished",
    "is.ped",
    "is.pedlist",
    "is.phe",
    "is.pped",
    "obfuscate",
    "pbat",
    "pbat.clean",
    "pbat.concatenate",
    "pbat.create.commandfile",
    "pbat.files",
    "pbat.firsttime",
    "pbat.get",
    "pbat.getmode",
    "pbat.getwine",
    "pbat.help",
    "pbat.last",
    "pbat.last.rawResults",
    "pbat.load",
    "pbat.m",
    "pbat.obj",
    "pbat.power",
    "pbat.powerCmd",
    "pbat.set",
    "pbat.setmode",
    "pbat.setmode.defaults",
    "pbat.setVersionCheck",
    "pbat.setwine",
    "pbat.status",
    "pbat.unwork",
    "pbat.work",
    "pedMarkerNames",
    "plotCPed",
    "plotPed",
    "read.cped",
    "read.ped",
    "read.phe",
    "read.pped",
    "top",
    "write.cped",
    "write.pbat",
    "write.pbat.csv",
    "write.ped",
    "write.phe"
  ],
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    {
      "page": "affectionPhe",
      "title": "Affection Phenotype Object",
      "topics": [
        "affectionPhe"
      ]
    },
    {
      "page": "c2bat",
      "title": "C2BAT",
      "topics": [
        "c2bat"
      ]
    },
    {
      "page": "pbat.clean",
      "title": "Cleaning pbat(), pbat.last(), pbat.m() output.",
      "topics": [
        "pbat.clean"
      ]
    },
    {
      "page": "cluster",
      "title": "Cluster result functions",
      "topics": [
        "is.finished",
        "pbat.concatenate",
        "pbat.load"
      ]
    },
    {
      "page": "cped",
      "title": "Phenotype Object",
      "topics": [
        "as.cped",
        "fread.cped",
        "is.cped",
        "plotCPed",
        "read.cped",
        "sort.cped",
        "write.cped"
      ]
    },
    {
      "page": "summary",
      "title": "`pbat' Object Generic Routines",
      "topics": [
        "plot.pbat",
        "print.pbat",
        "summary.pbat"
      ]
    },
    {
      "page": "obfuscate",
      "title": "Obfuscating Pedigree and Phenotype Files",
      "topics": [
        "obfuscate"
      ]
    },
    {
      "page": "pbat",
      "title": "PBAT Graphical and Command Line Interface",
      "topics": [
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        "pbat.create.commandfile",
        "pbat.files",
        "pbat.last",
        "pbat.last.rawResults",
        "pbat.m",
        "pbat.obj"
      ]
    },
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      "topics": [
        "pbat.firsttime",
        "pbat.help"
      ]
    },
    {
      "page": "pbat.set",
      "title": "Set Pbat Parameters",
      "topics": [
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        "pbat.getmode",
        "pbat.getwine",
        "pbat.set",
        "pbat.setmode",
        "pbat.setmode.defaults",
        "pbat.setVersionCheck",
        "pbat.setwine"
      ]
    },
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      "title": "PBAT Status of Run",
      "topics": [
        "pbat.status"
      ]
    },
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      "page": "pbat.work",
      "title": "pbatRwork Temp Directory",
      "topics": [
        "pbat.unwork",
        "pbat.work"
      ]
    },
    {
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      "title": "Pedigree Object",
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        "as.ped",
        "as.pedlist",
        "as.pped",
        "fread.ped",
        "is.ped",
        "is.pedlist",
        "is.pped",
        "pedMarkerNames",
        "plotPed",
        "read.ped",
        "read.pped",
        "sort.ped",
        "write.ped"
      ]
    },
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      "title": "Phenotype Object",
      "topics": [
        "as.phe",
        "fread.phe",
        "is.phe",
        "read.phe",
        "sort.phe",
        "write.phe"
      ]
    },
    {
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      "title": "Power Exploration",
      "topics": [
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        "pbat.powerCmd"
      ]
    },
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      "title": "top",
      "topics": [
        "top"
      ]
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      "title": "Saving `pbat' Object",
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        "write.pbat.csv"
      ]
    }
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