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  "Title": "Multiomics Data Integration",
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  "Description": "Provides functions to do 'O2PLS-DA' analysis for multiple\nomics data integration. The algorithm came from \"O2-PLS, a\ntwo-block (X±Y) latent variable regression (LVR) method with an\nintegral OSC filter\" which published by Johan Trygg and Svante\nWold at 2003 <doi:10.1002/cem.775>. 'O2PLS' is a bidirectional\nmultivariate regression method that aims to separate the\ncovariance between two data sets (it was recently extended to\nmultiple data sets) (Löfstedt and Trygg, 2011\n<doi:10.1002/cem.1388>; Löfstedt et al., 2012\n<doi:10.1016/j.aca.2013.06.026>) from the systematic sources of\nvariance being specific for each data set separately.",
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      "title": "Extract the loadings from an O2PLS fit",
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      "title": "extract the loading value from the O2PLSDA analysis",
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      "title": "extract the loading value from the PLSDA analysis",
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      "topics": [
        "o2pls"
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      "title": "Class \"O2pls\" This class represents the Annotation information",
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    {
      "page": "oplsda",
      "title": "Orthogonal partial least squares discriminant analysis",
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