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  "Title": "Compares the Distribution of Sister Clades Through a Phylogeny",
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  "Date": "2026-06-23",
  "Author": "Michael Krabbe Borregaard [aut, cre]",
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  "Description": "An implementation of the nodiv algorithm, see Borregaard,\nM.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. &\nGraham, C.H. (2014) \"Node-based analysis of species\ndistributions.\" Methods in Ecology and Evolution 5(11):\n1225-1235. <doi:10.1111/2041-210X.12283>. Package for\nphylogenetic analysis of species distributions. The main\nfunction goes through each node in the phylogeny, compares the\ndistributions of the two descendant nodes, and compares the\nresult to a null model. This highlights nodes where major\ndistributional divergence have occurred. The distributional\ndivergence for these nodes is mapped.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/mkborregaard/nodiv",
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    "basal_node",
    "coords",
    "Descendants",
    "distrib_data",
    "GND",
    "gridData",
    "MostRecentAncestor",
    "Node_analysis",
    "Node_occupancy",
    "Node_sites",
    "Node_size",
    "Node_species",
    "nodenumbers",
    "nodes",
    "Nodesig",
    "nodiv_data",
    "Nsites",
    "Nspecies",
    "occupancy",
    "occurrences",
    "Parent",
    "phyplot",
    "plot_grid",
    "plot_node",
    "plot_nodes_phylo",
    "plot_points",
    "plot_richness",
    "plot_sitestat",
    "plot_species",
    "plotSOS",
    "richness",
    "Sister",
    "sites",
    "sitestat",
    "SOS",
    "species",
    "species_stat",
    "subsample",
    "two_color_map",
    "update_object"
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      "title": "Distribution of coquette hummingbirds in Northern South America",
      "object": "coquettes",
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      "class": [
        "nodiv_data",
        "distrib_data"
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      "page": "nodiv-package",
      "title": "nodiv - Node-based analysis of species distributions",
      "topics": [
        "nodiv-package",
        "nodiv"
      ]
    },
    {
      "page": "add_shape",
      "title": "Add a shapefile to a 'nodiv' data object",
      "topics": [
        "add_shape"
      ]
    },
    {
      "page": "basal_node",
      "title": "Identify nodes in a phylogeny",
      "topics": [
        "basal_node",
        "Descendants",
        "MostRecentAncestor",
        "nodenumbers",
        "nodes",
        "Parent",
        "Sister"
      ]
    },
    {
      "page": "coquettes",
      "title": "Distribution of coquette hummingbirds in Northern South America",
      "topics": [
        "coquettes"
      ]
    },
    {
      "page": "distrib_data",
      "title": "Data objects for node-based analysis",
      "topics": [
        "distrib_data",
        "identify.distrib_data",
        "nodiv_data",
        "plot.distrib_data",
        "plot.nodiv_data",
        "print.distrib_data",
        "print.nodiv_data",
        "summary.distrib_data",
        "summary.nodiv_data"
      ]
    },
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      "topics": [
        "gridData"
      ]
    },
    {
      "page": "Node_analysis",
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      "topics": [
        "Node_analysis",
        "nodiv_result",
        "plot.nodiv_result",
        "print.nodiv_result",
        "print.summary_nodiv_result",
        "summary.nodiv_result"
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      "page": "Node_size",
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        "Node_occupancy",
        "Node_sites",
        "Node_size",
        "Node_species"
      ]
    },
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      "page": "Nodesig",
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      "topics": [
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      "title": "Basic attributes of 'distrib_data' objects",
      "topics": [
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        "Nsites",
        "Nspecies",
        "occupancy",
        "richness",
        "sites",
        "species"
      ]
    },
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      "title": "Access functions to the community matrix of 'distrib_data' objects",
      "topics": [
        "assemblage",
        "occurrences"
      ]
    },
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      "title": "Plot Phylogenies",
      "topics": [
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      ]
    },
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      "topics": [
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      ]
    },
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      "page": "plot_points",
      "title": "Plot a variable on spatial points or a spatial grid using a color scale.",
      "topics": [
        "plot_grid",
        "plot_points",
        "plot_species"
      ]
    },
    {
      "page": "plot_richness",
      "title": "Plot a richness map for an object of type distrib_data, nodiv_data or nodiv_result",
      "topics": [
        "plot_node",
        "plot_richness"
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    },
    {
      "page": "add_sitestat",
      "title": "Site statistics of 'nodiv' data objects",
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        "plot_sitestat",
        "sitestat"
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        "plotSOS",
        "SOS"
      ]
    },
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      "title": "Species statistics of 'nodiv' data objects",
      "topics": [
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        "species_stat"
      ]
    },
    {
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      "title": "Subsampling data objects to certain species or sites",
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        "subsample.nodiv_data",
        "subsample.nodiv_result"
      ]
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      "title": "Update 'distrib_data' objects to the 'nodiv' version >= 1.1 format",
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