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"Check a Design for Balance", "topics": [ "isBalanced", "isBalanced.groupedData" ] }, { "page": "isInitialized", "title": "Check if Object is Initialized", "topics": [ "isInitialized", "isInitialized.pdBlocked", "isInitialized.pdMat" ] }, { "page": "LDEsysMat", "title": "Generate system matrix for LDEs", "topics": [ "LDEsysMat" ] }, { "page": "lme", "title": "Linear Mixed-Effects Models", "topics": [ "lme", "lme.formula", "update.lme" ] }, { "page": "lme.groupedData", "title": "LME fit from groupedData Object", "topics": [ "lme.groupedData" ] }, { "page": "lme.lmList", "title": "LME fit from lmList Object", "topics": [ "lme.lmList" ] }, { "page": "lmeControl", "title": "Specifying Control Values for lme Fit", "topics": [ "lmeControl" ] }, { "page": "lmeObject", "title": "Fitted lme Object", "topics": [ "lmeObject" ] }, { "page": "lmeStruct", "title": "Linear Mixed-Effects Structure", "topics": [ "lmeStruct" ] }, { "page": "lmList", "title": "List of lm Objects with a Common Model", "topics": [ "lmList", "lmList.formula", "print.lmList", "update.lmList" ] }, { "page": "lmList.groupedData", "title": "lmList Fit from a groupedData Object", "topics": [ "lmList.groupedData" ] }, { "page": "logDet", "title": "Extract the Logarithm of the Determinant", "topics": [ "logDet" ] }, { "page": "logDet.corStruct", "title": "Extract corStruct Log-Determinant", "topics": [ "logDet.corStruct" ] }, { "page": "logDet.pdMat", "title": "Extract Log-Determinant from a pdMat Object", "topics": [ "logDet.pdBlocked", "logDet.pdCompSymm", "logDet.pdDiag", "logDet.pdIdent", "logDet.pdMat", "logDet.pdNatural", "logDet.pdSymm" ] }, { "page": "logDet.reStruct", "title": "Extract reStruct Log-Determinants", "topics": [ "logDet.reStruct" ] }, { "page": "logLik.corStruct", "title": "Extract corStruct Log-Likelihood", "topics": [ "logLik.corStruct" ] }, { "page": "logLik.glsStruct", "title": "Log-Likelihood of a glsStruct Object", "topics": [ "logLik.glsStruct" ] }, { "page": "logLik.gnls", "title": "Log-Likelihood of a gnls Object", "topics": [ "logLik.gnls" ] }, { "page": "logLik.gnlsStruct", "title": "Log-Likelihood of a gnlsStruct Object", "topics": [ "logLik.gnlsStruct" ] }, { "page": "logLik.lme", "title": "Log-Likelihood of an lme Object", "topics": [ "logLik.gls", "logLik.lme" ] }, { "page": "logLik.lmeStruct", "title": "Log-Likelihood of an lmeStruct Object", "topics": [ "logLik.lmeStruct", "logLik.lmeStructInt" ] }, { "page": "logLik.lmList", "title": "Log-Likelihood of an lmList Object", "topics": [ "logLik.lmList" ] }, { "page": "logLik.reStruct", "title": "Calculate reStruct Log-Likelihood", "topics": [ "logLik.reStruct" ] }, { "page": "logLik.varFunc", "title": "Extract varFunc logLik", "topics": [ "logLik.varComb", "logLik.varFunc" ] }, { "page": "Machines", "title": "Productivity Scores for Machines and Workers", "topics": [ "Machines" ] }, { "page": "MathAchieve", "title": "Mathematics achievement scores", "topics": [ "MathAchieve" ] }, { "page": "MathAchSchool", "title": "School demographic data for MathAchieve", "topics": [ "MathAchSchool" ] }, { "page": "Matrix", "title": "Assign Matrix Values", "topics": [ "matrix<-" ] }, { "page": "Matrix.pdMat", "title": "Assign Matrix to a pdMat or pdBlocked Object", "topics": [ "matrix<-.pdBlocked", "matrix<-.pdMat" ] }, { "page": "Matrix.reStruct", "title": "Assign reStruct Matrices", "topics": [ "matrix<-.reStruct" ] }, { "page": "Meat", "title": "Tenderness of meat", "topics": [ "Meat" ] }, { "page": "Milk", "title": "Protein content of cows' milk", "topics": [ "Milk" ] }, { "page": "model.matrix.reStruct", "title": "reStruct Model Matrix", "topics": [ "model.matrix.reStruct" ] }, { "page": "Muscle", "title": "Contraction of heart muscle sections", "topics": [ "Muscle" ] }, { "page": "Names", "title": "Names Associated with an Object", "topics": [ "Names", "Names<-" ] }, { "page": "Names.formula", "title": "Extract Names from a formula", "topics": [ "Names.formula", "Names.listForm" ] }, { "page": "Names.pdBlocked", "title": "Names of a pdBlocked Object", "topics": [ "Names.pdBlocked", "Names<-.pdBlocked" ] }, { "page": "Names.pdMat", "title": "Names of a pdMat Object", "topics": [ "Names.pdMat", "Names<-.pdMat" ] }, { "page": "Names.reStruct", "title": "Names of an reStruct Object", "topics": [ "Names.reStruct", "Names<-.reStruct" ] }, { "page": "needUpdate", "title": "Check if Update is Needed", "topics": [ "needUpdate", "needUpdate.default", "needUpdate.varComb", "needUpdate.varIdent" ] }, { "page": "needUpdate.modelStruct", "title": "Check if a modelStruct Object Needs Updating", "topics": [ "needUpdate.corStruct", "needUpdate.modelStruct", "needUpdate.reStruct" ] }, { "page": "Nitrendipene", "title": "Assay of nitrendipene", "topics": [ "Nitrendipene" ] }, { "page": "nlme", "title": "Nonlinear Mixed-Effects Models", "topics": [ "nlme", "nlme.formula" ] }, { "page": "nlme.nlsList", "title": "NLME fit from nlsList Object", "topics": [ "nlme.nlsList" ] }, { "page": "nlmeControl", "title": "Control Values for nlme Fit", "topics": [ "nlmeControl" ] }, { "page": "nlmeObject", "title": "Fitted nlme Object", "topics": [ "nlmeObject" ] }, { "page": "nlmeStruct", "title": "Nonlinear Mixed-Effects Structure", "topics": [ "nlmeStruct" ] }, { "page": "nlsList", "title": "List of nls Objects with a Common Model", "topics": [ "nlsList", "nlsList.formula", "update.nlsList" ] }, { "page": "nlsList.selfStart", "title": "nlsList Fit from a selfStart Function", "topics": [ "nlsList.selfStart" ] }, { "page": "Oats", "title": "Split-plot Experiment on Varieties of Oats", "topics": [ "Oats" ] }, { "page": "Orthodont", "title": "Growth curve data on an orthdontic measurement", "topics": [ "Orthodont" ] }, { "page": "Ovary", "title": "Counts of Ovarian Follicles", "topics": [ "Ovary" ] }, { "page": "Oxboys", "title": "Heights of Boys in Oxford", "topics": [ "Oxboys" ] }, { "page": "Oxide", "title": "Variability in Semiconductor Manufacturing", "topics": [ "Oxide" ] }, { "page": "pairs.compareFits", "title": "Pairs Plot of compareFits Object", "topics": [ "pairs.compareFits" ] }, { "page": "pairs.lme", "title": "Pairs Plot of an lme Object", "topics": [ "pairs.lme" ] }, { "page": "pairs.lmList", "title": "Pairs Plot of an lmList Object", "topics": [ "pairs.lmList" ] }, { "page": "PBG", "title": "Effect of Phenylbiguanide on Blood Pressure", "topics": [ "PBG" ] }, { "page": "pdBlocked", "title": "Positive-Definite Block Diagonal Matrix", "topics": [ "pdBlocked" ] }, { "page": "pdClasses", "title": "Positive-Definite Matrix Classes", "topics": [ "pdClasses" ] }, { "page": "pdCompSymm", "title": "Positive-Definite Matrix with Compound Symmetry Structure", "topics": [ "pdCompSymm" ] }, { "page": "pdConstruct", "title": "Construct pdMat Objects", "topics": [ "pdConstruct", "pdConstruct.pdCompSymm", "pdConstruct.pdDiag", "pdConstruct.pdIdent", "pdConstruct.pdLogChol", "pdConstruct.pdMat", "pdConstruct.pdNatural", "pdConstruct.pdSymm" ] }, { "page": "pdConstruct.pdBlocked", "title": "Construct pdBlocked Objects", "topics": [ "pdConstruct.pdBlocked" ] }, { "page": "pdDiag", "title": "Diagonal Positive-Definite Matrix", "topics": [ "pdDiag" ] }, { "page": "pdFactor", "title": "Square-Root Factor of a Positive-Definite Matrix", "topics": [ "pdFactor", "pdFactor.pdBlocked", "pdFactor.pdCompSymm", "pdFactor.pdDiag", "pdFactor.pdIdent", "pdFactor.pdLogChol", "pdFactor.pdMat", "pdFactor.pdNatural", "pdFactor.pdSymm" ] }, { "page": "pdFactor.reStruct", "title": "Extract Square-Root Factor from Components of an reStruct Object", "topics": [ "pdFactor.reStruct" ] }, { "page": "pdIdent", "title": "Multiple of the Identity Positive-Definite Matrix", "topics": [ "pdIdent" ] }, { "page": "pdLogChol", "title": "General Positive-Definite Matrix", "topics": [ "pdLogChol" ] }, { "page": "pdMat", "title": "Positive-Definite Matrix", "topics": [ "pdMat", "plot.pdMat" ] }, { "page": "pdMatrix", "title": "Extract Matrix or Square-Root Factor from a pdMat Object", "topics": [ "pdMatrix", "pdMatrix.pdBlocked", "pdMatrix.pdCompSymm", "pdMatrix.pdDiag", "pdMatrix.pdIdent", "pdMatrix.pdMat", "pdMatrix.pdNatural", "pdMatrix.pdSymm" ] }, { "page": "pdMatrix.reStruct", "title": "Extract Matrix or Square-Root Factor from Components of an reStruct Object", "topics": [ "pdMatrix.reStruct" ] }, { "page": "pdNatural", "title": "General Positive-Definite Matrix in Natural Parametrization", "topics": [ "pdNatural" ] }, { "page": "pdSymm", "title": "General Positive-Definite Matrix", "topics": [ "pdSymm" ] }, { "page": "Phenobarb", "title": "Phenobarbitol Kinetics", "topics": [ "Phenobarb" ] }, { "page": "phenoModel", "title": "Model function for the Phenobarb data", "topics": [ "phenoModel" ] }, { "page": "Pixel", "title": "X-ray pixel intensities over time", "topics": [ "Pixel" ] }, { "page": "plot.ACF", "title": "Plot an ACF Object", "topics": [ "plot.ACF" ] }, { "page": "plot.augPred", "title": "Plot an augPred Object", "topics": [ "plot.augPred" ] }, { "page": "plot.compareFits", "title": "Plot a compareFits Object", "topics": [ "plot.compareFits" ] }, { "page": "plot.gls", "title": "Plot a gls Object", "topics": [ "plot.gls" ] }, { "page": "plot.intervals.lmList", "title": "Plot lmList Confidence Intervals", "topics": [ "plot.intervals.lmList" ] }, { "page": "plot.lme", "title": "Plot an lme or nls object", "topics": [ "plot.lme", "plot.nls" ] }, { "page": "plot.lmList", "title": "Plot an lmList Object", "topics": [ "plot.lmList" ] }, { "page": "plot.nffGroupedData", "title": "Plot an nffGroupedData Object", "topics": [ "plot.nffGroupedData" ] }, { "page": "plot.nfnGroupedData", "title": "Plot an nfnGroupedData Object", "topics": [ "plot.nfnGroupedData" ] }, { "page": "plot.nmGroupedData", "title": "Plot an nmGroupedData Object", "topics": [ "plot.nmGroupedData" ] }, { "page": "plot.ranef.lme", "title": "Plot a ranef.lme Object", "topics": [ "plot.ranef.lme" ] }, { "page": "plot.ranef.lmList", "title": "Plot a ranef.lmList Object", "topics": [ "plot.ranef.lmList" ] }, { "page": "plot.Variogram", "title": "Plot a Variogram Object", "topics": [ "plot.Variogram" ] }, { "page": "pooledSD", "title": "Extract Pooled Standard Deviation", "topics": [ "pooledSD" ] }, { "page": "predict.gls", "title": "Predictions from a gls Object", "topics": [ "predict.gls" ] }, { "page": "predict.gnls", "title": "Predictions from a gnls Object", "topics": [ "predict.gnls" ] }, { "page": "predict.lme", "title": "Predictions from an lme Object", "topics": [ "predict.lme" ] }, { "page": "predict.lmList", "title": "Predictions from an lmList Object", "topics": [ "predict.lmList" ] }, { "page": "predict.nlme", "title": "Predictions from an nlme Object", "topics": [ "predict.nlme" ] }, { "page": "print.summary.pdMat", "title": "Print a summary.pdMat Object", "topics": [ "print.summary.pdMat" ] }, { "page": "print.varFunc", "title": "Print a varFunc Object", "topics": [ "print.varComb", "print.varFunc" ] }, { "page": "qqnorm.gls", "title": "Normal Plot of Residuals from a gls Object", "topics": [ "qqnorm.gls" ] }, { "page": "qqnorm.lme", "title": "Normal Plot of Residuals or Random Effects from an lme Object", "topics": [ "qqnorm.lm", "qqnorm.lme", "qqnorm.lmList", "qqnorm.nls" ] }, { "page": "Quinidine", "title": "Quinidine Kinetics", "topics": [ "Quinidine" ] }, { "page": "quinModel", "title": "Model function for the Quinidine data", "topics": [ "quinModel" ] }, { "page": "Rail", "title": "Evaluation of Stress in Railway Rails", "topics": [ "Rail" ] }, { "page": "random.effects", "title": "Extract Random Effects", "topics": [ "random.effects", "ranef" ] }, { "page": "ranef.lme", "title": "Extract lme Random Effects", "topics": [ "print.ranef.lme", "random.effects.lme", "ranef.lme" ] }, { "page": "ranef.lmList", "title": "Extract lmList Random Effects", "topics": [ "random.effects.lmList", "ranef.lmList" ] }, { "page": "RatPupWeight", "title": "The weight of rat pups", "topics": [ "RatPupWeight" ] }, { "page": "recalc", "title": "Recalculate Condensed Linear Model Object", "topics": [ "recalc" ] }, { "page": "recalc.corStruct", "title": "Recalculate for corStruct Object", "topics": [ "recalc.corAR1", "recalc.corARMA", "recalc.corCAR1", "recalc.corCompSymm", "recalc.corNatural", "recalc.corSpatial", "recalc.corStruct", "recalc.corSymm" ] }, { "page": "recalc.modelStruct", "title": "Recalculate for a modelStruct Object", "topics": [ "recalc.modelStruct" ] }, { "page": "recalc.reStruct", "title": "Recalculate for an reStruct Object", "topics": [ "recalc.reStruct" ] }, { "page": "recalc.varFunc", "title": "Recalculate for varFunc Object", "topics": [ "recalc.varFunc", "recalc.varIdent" ] }, { "page": "Relaxin", "title": "Assay for Relaxin", "topics": [ "Relaxin" ] }, { "page": "Remifentanil", "title": "Pharmacokinetics of Remifentanil", "topics": [ "Remifentanil" ] }, { "page": "residuals.gls", "title": "Extract gls Residuals", "topics": [ "residuals.gls", "residuals.gnls" ] }, { "page": "residuals.glsStruct", "title": "Calculate glsStruct Residuals", "topics": [ "residuals.glsStruct" ] }, { "page": "residuals.gnlsStruct", "title": "Calculate gnlsStruct Residuals", "topics": [ "residuals.gnlsStruct" ] }, { "page": "residuals.lme", "title": "Extract lme Residuals", "topics": [ "residuals.lme" ] }, { "page": "residuals.lmeStruct", "title": "Calculate lmeStruct Residuals", "topics": [ "residuals.lmeStruct" ] }, { "page": "residuals.lmList", "title": "Extract lmList Residuals", "topics": [ "residuals.lmList" ] }, { "page": "residuals.nlmeStruct", "title": "Calculate nlmeStruct Residuals", "topics": [ "residuals.nlmeStruct" ] }, { "page": "reStruct", "title": "Random Effects Structure", "topics": [ "print.reStruct", "reStruct", "[.reStruct" ] }, { "page": "simulate.lme", "title": "Simulate Results from 'lme' Models", "topics": [ "plot.simulate.lme", "print.simulate.lme", "simulate.lme" ] }, { "page": "solve.pdMat", "title": "Calculate Inverse of a Positive-Definite Matrix", "topics": [ "solve.pdBlocked", "solve.pdDiag", "solve.pdIdent", "solve.pdLogChol", "solve.pdMat", "solve.pdNatural", "solve.pdSymm" ] }, { "page": "solve.reStruct", "title": "Apply Solve to an reStruct Object", "topics": [ "solve.reStruct" ] }, { "page": "Soybean", "title": "Growth of soybean plants", "topics": [ "Soybean" ] }, { "page": "splitFormula", "title": "Split a Formula", "topics": [ "splitFormula" ] }, { "page": "Spruce", "title": "Growth of Spruce Trees", "topics": [ "Spruce" ] }, { "page": "summary.corStruct", "title": "Summarize a corStruct Object", "topics": [ "summary.corAR1", "summary.corARMA", "summary.corCAR1", "summary.corCompSymm", "summary.corExp", "summary.corGaus", "summary.corLin", "summary.corNatural", "summary.corRatio", "summary.corSpher", "summary.corStruct", "summary.corSymm" ] }, { "page": "summary.gls", "title": "Summarize a Generalized Least Squares 'gls' Object", "topics": [ "summary.gls" ] }, { "page": "summary.lme", "title": "Summarize an lme Object", "topics": [ "print.summary.lme", "summary.lme" ] }, { "page": "summary.lmList", "title": "Summarize an lmList Object", "topics": [ "summary.lmList" ] }, { "page": "summary.modelStruct", "title": "Summarize a modelStruct Object", "topics": [ "summary.modelStruct", "summary.reStruct" ] }, { "page": "summary.nlsList", "title": "Summarize an nlsList Object", "topics": [ "summary.nlsList" ] }, { "page": "summary.pdMat", "title": "Summarize a pdMat Object", "topics": [ "summary.pdBlocked", "summary.pdCompSymm", "summary.pdDiag", "summary.pdIdent", "summary.pdLogChol", "summary.pdMat", "summary.pdNatural", "summary.pdSymm" ] }, { "page": "summary.varFunc", "title": "Summarize \"varFunc\" Object", "topics": [ "summary.varComb", "summary.varConstPower", "summary.varConstProp", "summary.varExp", "summary.varFixed", "summary.varFunc", "summary.varIdent", "summary.varPower" ] }, { "page": "Tetracycline1", "title": "Pharmacokinetics of tetracycline", "topics": [ "Tetracycline1" ] }, { "page": "Tetracycline2", "title": "Pharmacokinetics of tetracycline", "topics": [ "Tetracycline2" ] }, { "page": "update.modelStruct", "title": "Update a modelStruct Object", "topics": [ "update.corStruct", "update.modelStruct", "update.reStruct" ] }, { "page": "update.varFunc", "title": "Update varFunc Object", "topics": [ "update.varComb", "update.varConstPower", "update.varConstProp", "update.varExp", "update.varExpon", "update.varFunc", "update.varPower" ] }, { "page": "varClasses", "title": "Variance Function Classes", "topics": [ "varClasses" ] }, { "page": "varComb", "title": "Combination of Variance Functions", "topics": [ "varComb" ] }, { "page": "varConstPower", "title": "Constant Plus Power Variance Function", "topics": [ "varConstPower" ] }, { "page": "varConstProp", "title": "Constant Plus Proportion Variance Function", "topics": [ "varConstProp" ] }, { "page": "VarCorr", "title": "Extract variance and correlation components", "topics": [ "print.VarCorr.lme", "VarCorr", 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