{ "_id": "6a398f654c3da884a9288e0d", "Package": "nfcore.utils", "Version": "0.0.4", "Date": "2026-06-17", "Title": "Utilities for 'nf-core' Modules", "Authors@R": "c(\nperson(\"nf-core\", \"Community\", role=\"aut\"),\nperson(\"Louis\", \"Le Nezet\", email=\"louislenezet@gmail.com\",\nrole=c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0009-0000-0202-2703\"))\n)", "Description": "Provides utility functions to facilitate the use of R\nwithin nf-core modules. The package helps parse 'Nextflow'\ninputs and perform validation checks to ensure correct\nparameter handling and reproducible execution. For more details\nsee Ewels (2020) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "BugReports": "https://github.com/nf-core/r-nf-core-utils/issues", "URL": "https://github.com/nf-core/r-nf-core-utils", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-22 19:36:42 UTC", "User": "root" }, "Author": "nf-core Community [aut], Louis Le Nezet [aut, cre, cph] (ORCID:\n)", "Maintainer": "Louis Le Nezet ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-06-22 18:32:33 UTC", "RemoteUrl": "https://github.com/cran/nfcore.utils", "RemoteRef": "HEAD", "RemoteSha": "d69f36ca066ce37ec40bdd9b6d69e29d30b7ecde", "MD5sum": "e843335ec505db873117faa3af66843b", "_user": "cran", "_type": "src", "_file": "nfcore.utils_0.0.4.tar.gz", "_fileid": "6fdc7b97265a9ba6d9d70ed2d412f9770c78bd08877905e68a93d4530dd982fc", "_filesize": 736905, "_sha256": "6fdc7b97265a9ba6d9d70ed2d412f9770c78bd08877905e68a93d4530dd982fc", "_created": "2026-06-22T19:36:42.000Z", "_published": "2026-06-22T19:39:17.062Z", "_distro": "noble", "_jobs": [ { "job": 82803616654, "time": 115, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7802987183" }, { "job": 82803616658, "time": 117, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7802988611" }, { "job": 82803143690, "time": 140, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7802942501" }, { "job": 82803616672, "time": 96, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7802980555" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27978733392", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/nfcore.utils", "_commit": { "id": "d69f36ca066ce37ec40bdd9b6d69e29d30b7ecde", "author": "Louis Le Nezet ", "committer": "cran-robot ", "message": "version 0.0.4\n", "time": 1782153153 }, "_maintainer": { "name": "Louis Le Nezet", "email": "louislenezet@gmail.com", "login": "louislenezet", "uuid": 58640615 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.4.0", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "withr", "role": "Suggests" }, { "package": "yaml", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-26", "n": 1 } ], "_tags": [ { "name": "0.0.4", "date": "2026-06-22" } ], "_stars": 0, "_contributors": [ { "user": "louislenezet", "count": 1, "uuid": 58640615 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 609, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/nfcore.utils" }, "_devurl": "https://github.com/nf-core/r-nf-core-utils", "_searchresults": 6, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/nfcore.utils.html", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_cranurl": false, "_releases": [ { "version": "0.0.4", "date": "2026-06-22" } ], "_exports": [ "create_log_session_info", "create_versions_yml", "is_null_or_invalid", "is_valid_string", "nullify", "parse_arguments", "process_end", "process_inputs", "valid_string", "validate_boolean", "validate_double", "validate_file", "validate_folder", "validate_integer" ], "_help": [ { "page": "nfcore.utils_package", "title": "The nf-core utils R package for Nextflow processes", "topics": [ "nfcore.utils-package", "nfcore.utils" ] }, { "page": "create_log_session_info", "title": "Log R session info", "topics": [ "create_log_session_info" ] }, { "page": "create_versions_yml", "title": "Create versions.yml file", "topics": [ "create_versions_yml" ] }, { "page": "is_null_or_invalid", "title": "Check if is 'NULL' or invalid", "topics": [ "is_null_or_invalid" ] }, { "page": "is_valid_string", "title": "Check for Non-Empty, Non-Whitespace String", "topics": [ "is_valid_string" ] }, { "page": "nullify", "title": "Turn “null” or empty strings into actual NULL", "topics": [ "nullify" ] }, { "page": "parse_arguments", "title": "Parse out options from a string without recourse to optparse", "topics": [ "parse_arguments" ] }, { "page": "process_end", "title": "Process end of the workflow", "topics": [ "process_end" ] }, { "page": "process_inputs", "title": "Process input parameters and files", "topics": [ "process_inputs" ] }, { "page": "read_delim_flexible", "title": "Flexibly read CSV or TSV files", "topics": [ "read_delim_flexible" ] }, { "page": "valid_string", "title": "Check for Non-Empty, Non-Whitespace String", "topics": [ "valid_string" ] }, { "page": "validate_boolean", "title": "Check if value is a boolean", "topics": [ "validate_boolean" ] }, { "page": "validate_double", "title": "Check if value is a double number", "topics": [ "validate_double" ] }, { "page": "validate_file", "title": "Check if value is an existing file", "topics": [ "validate_file" ] }, { "page": "validate_folder", "title": "Check if value is an existing folder", "topics": [ "validate_folder" ] }, { "page": "validate_integer", "title": "Check if value is an integer", "topics": [ "validate_integer" ] } ], "_readme": "https://github.com/cran/nfcore.utils/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "nfcore_utils.Rmd", "filename": "nfcore_utils.html", "title": "R nf-core utils tutorial", "author": "Louis Le Nezet", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Main function", "Function process_inputs()", "Parameter opt", "Parameter args", "Validation rules", "Function process_end()", "Parameter packages", "Usage example", "Session information" ], "created": "2026-06-22 18:32:33", "modified": "2026-06-22 18:32:33", "commits": 1 } ], "_score": 2.6989700043360187, "_indexed": false, "_nocasepkg": "nfcore.utils", "_universes": [ "cran", "louislenezet", "nf-core" ], "_indexurl": "https://nf-core.r-universe.dev/nfcore.utils", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.4", "date": "2026-06-22T19:38:39.000Z", "distro": "noble", "commit": "d69f36ca066ce37ec40bdd9b6d69e29d30b7ecde", "fileid": "47834e4ab87dc8dcc3962e7db572bd0cd035dc0c19f0f38cb9ea6a0846b63f2e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27978733392" }, { "r": "4.6.0", "os": "linux", "version": "0.0.4", "date": "2026-06-22T19:38:41.000Z", "distro": "noble", "commit": "d69f36ca066ce37ec40bdd9b6d69e29d30b7ecde", "fileid": "5034121b5a69721930dd1a6da0cc41c45def4081a0ced5dc6710fa398fcbe8d4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27978733392" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.4", "date": "2026-06-22T19:38:32.000Z", "commit": "d69f36ca066ce37ec40bdd9b6d69e29d30b7ecde", "fileid": "a424205fd00f05ed1af7d1b7103f01ab3b393bc5f220cd21c76164b247b90799", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27978733392" } ] }