{
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  "Package": "nemoR",
  "Title": "Access Open 'NeMO Archive' Datasets",
  "Version": "0.99.3",
  "Authors@R": "c(\nperson(\"Maciej\", \"Pietrzak\", email = \"pietrzak.20@osu.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5768-7884\")),\nperson(given = \"AbdElrahman\", family = \"Amer\", role = \"aut\")\n)",
  "Author": "Maciej Pietrzak [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-5768-7884>), AbdElrahman Amer\n[aut]",
  "Maintainer": "Maciej Pietrzak <pietrzak.20@osu.edu>",
  "Description": "Provides helpers for discovering, planning, and\ndownloading open-access datasets from the Neuroscience\nMulti-Omic Archive ('NeMO'; <https://nemoarchive.org/>). The\npackage builds reproducible file manifests that record search\nparameters, file metadata, download URLs, checksums, and local\nfile paths. It supports exploratory 'NeMO' metadata queries and\nprovides first-pass bridges from downloaded files into\n'SingleCellExperiment' and 'Seurat' workflows.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/roxygen2/version": "8.0.0",
  "NeedsCompilation": "no",
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    "User": "root"
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  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-07-06 14:40:38 UTC",
  "RemoteUrl": "https://github.com/cran/nemoR",
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  "_created": "2026-07-06T16:31:55.000Z",
  "_published": "2026-07-06T16:36:37.466Z",
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    "nemo_as_sce",
    "nemo_as_seurat",
    "nemo_assays",
    "nemo_brain_regions",
    "nemo_cache_dir",
    "nemo_collection",
    "nemo_collections",
    "nemo_data_types",
    "nemo_download",
    "nemo_download_plan",
    "nemo_example_collections",
    "nemo_facet_values",
    "nemo_fetch",
    "nemo_file",
    "nemo_file_formats",
    "nemo_files",
    "nemo_labs",
    "nemo_load",
    "nemo_manifest",
    "nemo_manifest_from_urls",
    "nemo_modalities",
    "nemo_platforms",
    "nemo_project",
    "nemo_read_10x_h5",
    "nemo_read_h5ad",
    "nemo_read_manifest",
    "nemo_read_mtx",
    "nemo_search",
    "nemo_search_fields",
    "nemo_search_manifest",
    "nemo_species",
    "nemo_studies",
    "nemo_taxa",
    "nemo_techniques",
    "nemo_validate_manifest",
    "nemo_write_manifest"
  ],
  "_help": [
    {
      "page": "nemo_access_types",
      "title": "List available file access categories",
      "topics": [
        "nemo_access_types"
      ]
    },
    {
      "page": "nemo_as_sce",
      "title": "Convert downloaded NeMO files to a SingleCellExperiment",
      "topics": [
        "nemo_as_sce"
      ]
    },
    {
      "page": "nemo_as_seurat",
      "title": "Convert a SingleCellExperiment to a Seurat object",
      "topics": [
        "nemo_as_seurat"
      ]
    },
    {
      "page": "nemo_assays",
      "title": "List available assays",
      "topics": [
        "nemo_assays"
      ]
    },
    {
      "page": "nemo_brain_regions",
      "title": "List available brain regions/anatomies",
      "topics": [
        "nemo_brain_regions"
      ]
    },
    {
      "page": "nemo_cache_dir",
      "title": "Get the nemoR cache directory",
      "topics": [
        "nemo_cache_dir"
      ]
    },
    {
      "page": "nemo_collection",
      "title": "Retrieve a NeMO collection",
      "topics": [
        "nemo_collection"
      ]
    },
    {
      "page": "nemo_collections",
      "title": "List NeMO collections",
      "topics": [
        "nemo_collections"
      ]
    },
    {
      "page": "nemo_data_types",
      "title": "List available file data types",
      "topics": [
        "nemo_data_types"
      ]
    },
    {
      "page": "nemo_download",
      "title": "Download files from a NeMO manifest",
      "topics": [
        "nemo_download"
      ]
    },
    {
      "page": "nemo_download_plan",
      "title": "Summarize a planned NeMO download",
      "topics": [
        "nemo_download_plan"
      ]
    },
    {
      "page": "nemo_example_collections",
      "title": "Example public NeMO collection identifiers",
      "topics": [
        "nemo_example_collections"
      ]
    },
    {
      "page": "nemo_facet_values",
      "title": "List available values for NeMO portal facets",
      "topics": [
        "nemo_facet_values"
      ]
    },
    {
      "page": "nemo_fetch",
      "title": "Search NeMO and download matching files",
      "topics": [
        "nemo_fetch"
      ]
    },
    {
      "page": "nemo_file",
      "title": "Retrieve a NeMO file record",
      "topics": [
        "nemo_file"
      ]
    },
    {
      "page": "nemo_file_formats",
      "title": "List available file formats",
      "topics": [
        "nemo_file_formats"
      ]
    },
    {
      "page": "nemo_files",
      "title": "List files attached to a NeMO collection",
      "topics": [
        "nemo_files"
      ]
    },
    {
      "page": "nemo_labs",
      "title": "List available labs",
      "topics": [
        "nemo_labs"
      ]
    },
    {
      "page": "nemo_load",
      "title": "Load downloaded NeMO files into an analysis object",
      "topics": [
        "nemo_load"
      ]
    },
    {
      "page": "nemo_manifest",
      "title": "Build a reproducible NeMO file manifest",
      "topics": [
        "nemo_manifest"
      ]
    },
    {
      "page": "nemo_manifest_from_urls",
      "title": "Build a NeMO manifest from direct URLs",
      "topics": [
        "nemo_manifest_from_urls"
      ]
    },
    {
      "page": "nemo_modalities",
      "title": "List available modalities",
      "topics": [
        "nemo_modalities"
      ]
    },
    {
      "page": "nemo_platforms",
      "title": "List available sequencing or assay platforms",
      "topics": [
        "nemo_platforms"
      ]
    },
    {
      "page": "nemo_project",
      "title": "Retrieve a NeMO project",
      "topics": [
        "nemo_project"
      ]
    },
    {
      "page": "nemo_read_10x_h5",
      "title": "Read a downloaded 10x Genomics HDF5 file",
      "topics": [
        "nemo_read_10x_h5"
      ]
    },
    {
      "page": "nemo_read_h5ad",
      "title": "Read a downloaded H5AD file as a SingleCellExperiment",
      "topics": [
        "nemo_read_h5ad"
      ]
    },
    {
      "page": "nemo_read_manifest",
      "title": "Read a NeMO manifest",
      "topics": [
        "nemo_read_manifest"
      ]
    },
    {
      "page": "nemo_read_mtx",
      "title": "Read a Matrix Market count matrix directory",
      "topics": [
        "nemo_read_mtx"
      ]
    },
    {
      "page": "nemo_search",
      "title": "Search NeMO portal files, samples, or projects",
      "topics": [
        "nemo_search"
      ]
    },
    {
      "page": "nemo_search_fields",
      "title": "List searchable NeMO portal fields",
      "topics": [
        "nemo_search_fields"
      ]
    },
    {
      "page": "nemo_search_manifest",
      "title": "Search NeMO and build a download-ready manifest",
      "topics": [
        "nemo_search_manifest"
      ]
    },
    {
      "page": "nemo_species",
      "title": "List available species or taxa in NeMO",
      "topics": [
        "nemo_species"
      ]
    },
    {
      "page": "nemo_studies",
      "title": "List available studies/grants",
      "topics": [
        "nemo_studies"
      ]
    },
    {
      "page": "nemo_taxa",
      "title": "List available taxa",
      "topics": [
        "nemo_taxa"
      ]
    },
    {
      "page": "nemo_techniques",
      "title": "List available techniques",
      "topics": [
        "nemo_techniques"
      ]
    },
    {
      "page": "nemo_validate_manifest",
      "title": "Validate a NeMO manifest",
      "topics": [
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      ]
    },
    {
      "page": "nemo_write_manifest",
      "title": "Write a NeMO manifest",
      "topics": [
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      ]
    }
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