{
  "_id": "6ae3191b8d250e7ad09efd85",
  "Package": "multipleDL",
  "Version": "1.0.0",
  "Date": "2023-11-17",
  "Title": "Addressing Detection Limits by Cumulative Probability Models\n(CPMs)",
  "Authors@R": "c(person(\"Yuqi\", \"Tian\", role=c(\"aut\", \"cre\"), email=\"yuqitian35@gmail.com\"),\nperson(\"Chun\", \"Li\", role=\"aut\"),\nperson(\"Shengxin\", \"Tu\", role=\"aut\"),\nperson(\"Nathan\", \"James\", role=\"aut\"),\nperson(\"Frank\", \"Harrell\", role=\"aut\"),\nperson(\"Bryan\", \"Shepherd\", role=\"aut\"))",
  "Description": "Build CPMs (cumulative probability models, also known as\ncumulative link models) to account for detection limits (both\nsingle and multiple detection limits) in response variables.\nConditional quantiles and conditional CDFs can be calculated\nbased on fitted models. The package implements methods\ndescribed in Tian, Y., Li, C., Tu, S., James, N. T., Harrell,\nF. E., & Shepherd, B. E. (2022). \"Addressing Detection Limits\nwith Semiparametric Cumulative Probability Models\".\n<arXiv:2207.02815>.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.2",
  "Biarch": "true",
  "SystemRequirements": "GNU make",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-29 09:52:57 UTC",
    "User": "root"
  },
  "Author": "Yuqi Tian [aut, cre], Chun Li [aut], Shengxin Tu [aut], Nathan\nJames [aut], Frank Harrell [aut], Bryan Shepherd [aut]",
  "Maintainer": "Yuqi Tian <yuqitian35@gmail.com>",
  "Config/pak/sysreqs": "make",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2023-11-25 02:33:25 UTC",
  "RemoteUrl": "https://github.com/cran/multipleDL",
  "RemoteRef": "HEAD",
  "RemoteSha": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
  "_user": "cran",
  "_type": "src",
  "_file": "multipleDL_1.0.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/1e3fdc590a59841544ad3073be117712e602ee195b4825d99899067f5363abb9",
  "_filesize": 121346,
  "_sha256": "1e3fdc590a59841544ad3073be117712e602ee195b4825d99899067f5363abb9",
  "_expires": "2027-02-06T09:59:53.000Z",
  "_created": "2026-10-29T09:52:57.000Z",
  "_published": "2026-10-29T09:59:55.498Z",
  "_upstream": "https://github.com/cran/multipleDL",
  "_status": "success",
  "_maintainer": {
    "name": "Yuqi Tian",
    "email": "yuqitian35@gmail.com",
    "login": "yuqitian35",
    "description": "Ph.D. in Biostatistics",
    "uuid": 8676262
  },
  "_jobs": [
    {
      "job": 123377818434,
      "time": 180,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12887739479"
    },
    {
      "job": 123377818642,
      "time": 247,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12888870346"
    },
    {
      "job": 123377818329,
      "time": 214,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12888830406"
    },
    {
      "job": 123377818746,
      "time": 230,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12888412035"
    },
    {
      "job": 123375616034,
      "time": 301,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12887773212"
    },
    {
      "job": 123377818468,
      "time": 179,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12887973149"
    },
    {
      "job": 123377818610,
      "time": 319,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12888123462"
    },
    {
      "job": 123377818595,
      "time": 283,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12888945178"
    },
    {
      "job": 123377818667,
      "time": 298,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12888243000"
    },
    {
      "job": 123377818722,
      "time": 209,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12887578161"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838",
  "_commit": {
    "id": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
    "author": "Yuqi Tian <yuqitian35@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.0\n",
    "time": 1700879605
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "BH",
      "version": ">= 1.66.0",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.0",
      "role": "LinkingTo"
    },
    {
      "package": "RcppEigen",
      "version": ">= 0.3.3.3.0",
      "role": "LinkingTo"
    },
    {
      "package": "RcppParallel",
      "version": ">= 5.0.1",
      "role": "LinkingTo"
    },
    {
      "package": "rstan",
      "version": ">= 2.18.1",
      "role": "LinkingTo"
    },
    {
      "package": "StanHeaders",
      "version": ">= 2.18.0",
      "role": "LinkingTo"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.0",
      "role": "Imports"
    },
    {
      "package": "RcppParallel",
      "version": ">= 5.0.1",
      "role": "Imports"
    },
    {
      "package": "rstan",
      "version": ">= 2.18.1",
      "role": "Imports"
    },
    {
      "package": "rstantools",
      "version": ">= 2.1.1",
      "role": "Imports"
    },
    {
      "package": "SparseM",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "yuqitian35",
      "count": 1,
      "uuid": 8676262
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 634,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 204,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/multipleDL"
  },
  "_searchresults": 2,
  "_topics": [
    "onetbb",
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/multipleDL.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/yuqitian35/multipledl",
  "_realowner": "yuqitian35",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2023-11-24"
    }
  ],
  "_exports": [
    "cdf_dl",
    "func_link",
    "multipleDL",
    "quantile_dl"
  ],
  "_help": [
    {
      "page": "multipleDL-package",
      "title": "Address Detection Limits by Cumulative Probability Models",
      "topics": [
        "multipleDL-package"
      ]
    },
    {
      "page": "cdf_dl",
      "title": "Calculate conditional CDFs",
      "topics": [
        "cdf_dl"
      ]
    },
    {
      "page": "func_link",
      "title": "Link functions",
      "topics": [
        "func_link"
      ]
    },
    {
      "page": "func_link_num",
      "title": "Link functions (number)",
      "topics": [
        "func_link_num"
      ]
    },
    {
      "page": "func_V",
      "title": "Calculate the covariance matrix",
      "topics": [
        "func_V"
      ]
    },
    {
      "page": "multipleDL",
      "title": "CPMs for multiple detection limits",
      "topics": [
        "multipleDL"
      ]
    },
    {
      "page": "quantile_dl",
      "title": "Calculate conditional quantiles",
      "topics": [
        "quantile_dl"
      ]
    },
    {
      "page": "selectedQr",
      "title": "QR Decomposition Preserving Selected Columns",
      "topics": [
        "selectedQr"
      ]
    }
  ],
  "_readme": "https://github.com/cran/multipleDL/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "backports",
    "BH",
    "callr",
    "checkmate",
    "cli",
    "cpp11",
    "desc",
    "distributional",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "inline",
    "isoband",
    "labeling",
    "lifecycle",
    "loo",
    "magrittr",
    "matrixStats",
    "numDeriv",
    "otel",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "posterior",
    "processx",
    "ps",
    "QuickJSR",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "RcppParallel",
    "rlang",
    "rstan",
    "rstantools",
    "S7",
    "scales",
    "SparseM",
    "StanHeaders",
    "tensorA",
    "tibble",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libtbb",
      "package": "libtbb12",
      "headers": "libtbb-dev",
      "source": "onetbb",
      "version": "2022.3.0-2",
      "name": "onetbb",
      "homepage": "https://uxlfoundation.github.io/oneTBB/",
      "description": "parallelism library for C++ - runtime files"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 1.6989700043360187,
  "_indexed": false,
  "_nocasepkg": "multipledl",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://yuqitian35.r-universe.dev/multipleDL",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-29T09:55:55.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
      "fileid": "https://r2.ropensci.org/2219325d5e57141006f8ae990e35c28086cfd7384df8ee526d3801e6ee0f8276",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-29T09:56:29.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
      "fileid": "https://r2.ropensci.org/8f8d309351ee2a950f74a344a8142d5633b4be029934ad251b96b5d31c229942",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-29T09:56:27.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
      "fileid": "https://r2.ropensci.org/acbec1bb3099725512d3d7fcd3237b981bad9e688f96f8a64e994919b8bd02dd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-29T09:56:17.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
      "fileid": "https://r2.ropensci.org/13b7d08d1db2ae2872ff00fde14ab02810027f92e5f1d3622831006081b8d3df",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-10-29T09:56:22.000Z",
      "arch": "emscripten",
      "commit": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
      "fileid": "https://r2.ropensci.org/910cd9bbe7192c2e65d1723c61df8f814853978a4f137554f51bae2c89d5b364",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-29T09:57:55.000Z",
      "arch": "aarch64",
      "commit": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
      "fileid": "https://r2.ropensci.org/26cc9ed498dfd036a1b9cda98b6343a17c8950f8829d1f7c3c55dcf981beed20",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-29T09:55:35.000Z",
      "arch": "x86_64",
      "commit": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
      "fileid": "https://r2.ropensci.org/a682d24a1ca72f423d2f629f9fa6637b6e9e9f0a38582dcb1cca503a282ad8c4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-29T09:57:33.000Z",
      "arch": "aarch64",
      "commit": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
      "fileid": "https://r2.ropensci.org/7d46de61ff98ae68076296ceccfc04efe8a23794dbc1174cf4dfc979108bf288",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-29T09:55:33.000Z",
      "arch": "x86_64",
      "commit": "f59d7f50aa62e074fee4faa45cc87b28c8e300f4",
      "fileid": "https://r2.ropensci.org/59892555ad7a5d8f88f8781db915453411d5dde236c70d8aadb6cf04cf5b27d5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40852355838"
    }
  ]
}