{ "_id": "6a1f25e0b401979e73421b55", "Package": "msig", "Title": "An R Package for Exploring Molecular Signatures Database", "Version": "1.0", "Authors@R": "c(\nperson(\"Jing\",\"Zhang\",role = c(\"aut\", \"cre\"),email = \"zj391120@163.com\"),\nperson(\"Zhi\", \"Jin\", role=\"aut\")\n)", "Description": "The Molecular Signatures Database ('MSigDB') is one of the\nmost widely used and comprehensive databases of gene sets for\nperforming gene set enrichment analysis\n. The 'msig' package provides\nyou with powerful, easy-to-use and flexible query functions for\nthe 'MsigDB' database. There are 2 query modes in the 'msig'\npackage: online query and local query. Both queries contain 2\nsteps: gene set name and gene. The online search is divided\ninto 2 modes: registered search and non-registered browse. For\nregistered search, email that you registered should be\nprovided. Local queries can be made from local database, which\ncan be updated by msig_update() function.", "License": "GPL-2", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-16 06:05:38 UTC", "User": "root" }, "Author": "Jing Zhang [aut, cre], Zhi Jin [aut]", "Maintainer": "Jing Zhang ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2021-06-29 06:50:02 UTC", "RemoteUrl": "https://github.com/cran/msig", "RemoteRef": "HEAD", "RemoteSha": "85b6b2e1507e00c6bda312bd94d2e54ab402d9c4", "MD5sum": "9410a5d718ca418caebc7212952b337f", "_user": "cran", "_type": "src", "_file": "msig_1.0.tar.gz", "_fileid": "5872e14a68c376ac24d29bc36a1ab675a3f139f9a202765e061fb20ec97acbaa", "_filesize": 151706, "_sha256": "5872e14a68c376ac24d29bc36a1ab675a3f139f9a202765e061fb20ec97acbaa", "_created": "2026-05-16T06:05:38.000Z", "_published": "2026-06-02T18:50:07.986Z", "_distro": "noble", "_jobs": [ { "job": 79147361619, "time": 132, "config": 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"rvest", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "set", "role": "Imports" }, { "package": "plyr", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "kableExtra", "role": "Imports" }, { "package": "tmcn", "role": "Imports" }, { "package": "crayon", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "sqldf", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 169, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/msig" }, "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/msig.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2021-06-29" } ], "_exports": [ "browse_msig", "browse_show_collection", "local_msig", "local_version", "msig_detail", "msig_download", "msig_filt", "msig_gene", "msig_geneSymbol", "msig_update", "msig_version", "msig_view", "NewMsigDB", "read_msigdb_xml", "related_geneset", "search_msig", "search_show_collection", "search_show_contributor", "search_show_organism", "show_local_collection", "show_local_contributor", "show_local_contributor_org", "show_local_data", "show_local_sub_collection", "similarity_geneset" ], "_help": [ { "page": "browse_msig", "title": "Retrieve Gene set Names from MSigDB database Retrieve gene set names from MSigDB database by the gene set name and collection. the search filed is gene name.", "topics": [ "browse_msig" ] }, { "page": "browse_show_collection", "title": "Show collection of MSigDB database", "topics": [ "browse_show_collection" ] }, { "page": "local_msig", "title": "Query gene set names from local data", "topics": [ "local_msig" ] }, { "page": "local_version", "title": "Local database version", "topics": [ "local_version" ] }, { "page": "msig_detail", "title": "Retrieve detail information of gene set", "topics": [ "msig_detail" ] }, { "page": "msig_download", "title": "Download MsigDB database", "topics": [ "msig_download" ] }, { "page": "msig_filt", "title": "Filt data by key words Case insensitive", "topics": [ "msig_filt" ] }, { "page": "msig_gene", "title": "Retrieve gene by Gene set Name", "topics": [ "msig_gene", "msig_gene.character", "msig_gene.data.frame" ] }, { "page": "msig_geneSymbol", "title": "Retrieve gene by Gene Symbol from MsigDB", "topics": [ "msig_geneSymbol", "msig_geneSymbol.character", "msig_geneSymbol.data.frame", "msig_geneSymbol.list" ] }, { "page": "msig_update", "title": "Update local MsigDB database", "topics": [ "msig_update" ] }, { "page": "msig_version", "title": "version information of MSigDB database", "topics": [ "msig_version" ] }, { "page": "msig_view", "title": "View data in viewer panel", "topics": [ "msig_view" ] }, { "page": "NewMsigDB", "title": "Create NewMsigDB object for new versions of MsigDB database", "topics": [ "NewMsigDB" ] }, { "page": "read_msigdb_xml", "title": "read MSigDB xml data", "topics": [ "read_msigdb_xml" ] }, { "page": "related_geneset", "title": "Query related gene sets", "topics": [ "related_geneset" ] }, { "page": "search_msig", "title": "Query MSigDB database by cookie", "topics": [ "search_msig" ] }, { "page": "search_show_collection", "title": "Show collctions for msigdb_search()", "topics": [ "search_show_collection" ] }, { "page": "search_show_contributor", "title": "Show contributor for msigdb_search()", "topics": [ "search_show_contributor" ] }, { "page": "search_show_organism", "title": "Show organism for msigdb_search()", "topics": [ "search_show_organism" ] }, { "page": "show_local_collection", "title": "Show collections of local MsigDB database", "topics": [ "show_local_collection" ] }, { "page": "show_local_contributor", "title": "Show contributors of local MsigDB database", "topics": [ "show_local_contributor" ] }, { "page": "show_local_contributor_org", "title": "Show contributor_orgs of local MsigDB database", "topics": [ "show_local_contributor_org" ] }, { "page": "show_local_data", "title": "Show local data used in this package", "topics": [ "show_local_data" ] }, { "page": "show_local_sub_collection", "title": "Show sub_collections of local MsigDB database", "topics": [ "show_local_sub_collection" ] }, { "page": "similarity_geneset", "title": "Query similarity gene sets", "topics": [ "similarity_geneset" ] } ], "_rundeps": [ "askpass", "base64enc", "bit", "bit64", "blob", "bslib", "cachem", "chron", "cli", "clipr", "cpp11", "crayon", "credentials", "curl", "data.table", "DBI", "desc", "digest", "do", 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