{
  "_id": "6a2276fccd65a98ecbd4b224",
  "Package": "momentuHMM",
  "Type": "Package",
  "Title": "Maximum Likelihood Analysis of Animal Movement Behavior Using\nMultivariate Hidden Markov Models",
  "Version": "1.5.8",
  "Date": "2025-11-24",
  "Authors@R": "c(person(given = \"Brett\",\nfamily = \"McClintock\",\nrole = c(\"aut\", \"cre\"),\nemail = \"brett.mcclintock@noaa.gov\"),\nperson(given = \"Theo\",\nfamily = \"Michelot\",\nrole = \"aut\"))",
  "Description": "Extended tools for analyzing telemetry data using\ngeneralized hidden Markov models. Features of momentuHMM\n(pronounced ``momentum'') include data pre-processing and\nvisualization, fitting HMMs to location and auxiliary\nbiotelemetry or environmental data, biased and correlated\nrandom walk movement models, hierarchical HMMs, multiple\nimputation for incorporating location measurement error and\nmissing data, user-specified design matrices and constraints\nfor covariate modelling of parameters, random effects, decoding\nof the state process, visualization of fitted models, model\nchecking and selection, and simulation. See McClintock and\nMichelot (2018) <doi:10.1111/2041-210X.12995>.",
  "License": "GPL-3",
  "LazyData": "TRUE",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "NeedsCompilation": "yes",
  "VignetteBuilder": "R.rsp",
  "URL": "https://github.com/bmcclintock/momentuHMM,\nhttps://github.com/bmcclintock/momentuHMM/discussions",
  "BugReports": "https://github.com/bmcclintock/momentuHMM/issues",
  "Packaged": {
    "Date": "2026-06-05 07:04:50 UTC",
    "User": "root"
  },
  "Author": "Brett McClintock [aut, cre], Theo Michelot [aut]",
  "Maintainer": "Brett McClintock <brett.mcclintock@noaa.gov>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2025-11-25 03:30:02 UTC",
  "RemoteUrl": "https://github.com/cran/momentuHMM",
  "RemoteRef": "HEAD",
  "RemoteSha": "b9f1eb645e5492f5ebd11565a9ff118c4d7627e8",
  "MD5sum": "8008487d8169c32027e32b5e76133a17",
  "_user": "cran",
  "_type": "src",
  "_file": "momentuHMM_1.5.8.tar.gz",
  "_fileid": "4275aec699bcf6f7057677717b90c7a53dbbd17d6b1c9e111ecd061bbff26414",
  "_filesize": 2821352,
  "_sha256": "4275aec699bcf6f7057677717b90c7a53dbbd17d6b1c9e111ecd061bbff26414",
  "_created": "2026-06-05T07:04:50.000Z",
  "_published": "2026-06-05T07:13:00.930Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79680584862,
      "time": 356,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7430861752"
    },
    {
      "job": 79680584893,
      "time": 383,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7430867781"
    },
    {
      "job": 79680584895,
      "time": 350,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430860150"
    },
    {
      "job": 79680584852,
      "time": 376,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430857088"
    },
    {
      "job": 79679865086,
      "time": 344,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430769086"
    },
    {
      "job": 79680584841,
      "time": 189,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430816978"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/27000556586",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/momentuHMM",
  "_commit": {
    "id": "b9f1eb645e5492f5ebd11565a9ff118c4d7627e8",
    "author": "Brett McClintock <brett.mcclintock@noaa.gov>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.5.8\n",
    "time": 1764041402
  },
  "_maintainer": {
    "name": "Brett McClintock",
    "email": "brett.mcclintock@noaa.gov",
    "login": "brettmcclintock-noaa",
    "description": "Research Statistician |\nPolar Ecosystem Program | Marine Mammal Laboratory |\nAlaska Fisheries Science Center | NOAA Fisheries ",
    "uuid": 206785855
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "numDeriv",
      "role": "Imports"
    },
    {
      "package": "CircStats",
      "role": "Imports"
    },
    {
      "package": "crawl",
      "version": ">= 2.2.1",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "sp",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "Brobdingnag",
      "role": "Imports"
    },
    {
      "package": "doRNG",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "raster",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "setRNG",
      "role": "Suggests"
    },
    {
      "package": "splines",
      "role": "Suggests"
    },
    {
      "package": "splines2",
      "version": ">= 0.2.8",
      "role": "Suggests"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    },
    {
      "package": "conicfit",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "ggmap",
      "role": "Suggests"
    },
    {
      "package": "lubridate",
      "role": "Suggests"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "magrittr",
      "role": "Suggests"
    },
    {
      "package": "scatterplot3d",
      "role": "Suggests"
    },
    {
      "package": "BB",
      "role": "Suggests"
    },
    {
      "package": "expm",
      "role": "Suggests"
    },
    {
      "package": "matrixcalc",
      "role": "Suggests"
    },
    {
      "package": "moveHMM",
      "role": "Suggests"
    },
    {
      "package": "extraDistr",
      "role": "Suggests"
    },
    {
      "package": "data.tree",
      "version": ">= 1.0.0",
      "role": "Suggests"
    },
    {
      "package": "geosphere",
      "role": "Suggests"
    },
    {
      "package": "mitools",
      "role": "Suggests"
    },
    {
      "package": "doFuture",
      "role": "Suggests"
    },
    {
      "package": "future",
      "role": "Suggests"
    },
    {
      "package": "car",
      "role": "Suggests"
    },
    {
      "package": "survival",
      "role": "Suggests"
    },
    {
      "package": "prodlim",
      "role": "Suggests"
    },
    {
      "package": "nleqslv",
      "role": "Suggests"
    },
    {
      "package": "qdapRegex",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 1
    },
    {
      "week": "2025-43",
      "n": 1
    },
    {
      "week": "2025-48",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.5.6",
      "date": "2025-07-21"
    },
    {
      "name": "1.5.7",
      "date": "2025-10-21"
    },
    {
      "name": "1.5.8",
      "date": "2025-11-25"
    }
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "brettmcclintock-noaa",
      "count": 19,
      "uuid": 206785855
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 633,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/momentuHMM"
  },
  "_mentions": 6,
  "_devurl": "https://github.com/bmcclintock/momentuhmm",
  "_searchresults": 268,
  "_topics": [
    "openblas",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/momentuHMM.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bmcclintock/momentuhmm",
  "_realowner": "bmcclintock",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-06-16"
    },
    {
      "version": "1.0.1",
      "date": "2017-07-19"
    },
    {
      "version": "1.1.0",
      "date": "2017-08-15"
    },
    {
      "version": "1.1.1",
      "date": "2017-09-20"
    },
    {
      "version": "1.2.0",
      "date": "2017-10-20"
    },
    {
      "version": "1.3.0",
      "date": "2017-12-08"
    },
    {
      "version": "1.4.0",
      "date": "2018-02-27"
    },
    {
      "version": "1.4.1",
      "date": "2018-05-22"
    },
    {
      "version": "1.4.2",
      "date": "2018-06-20"
    },
    {
      "version": "1.4.3",
      "date": "2018-11-22"
    },
    {
      "version": "1.5.0",
      "date": "2019-12-18"
    },
    {
      "version": "1.5.1",
      "date": "2020-03-06"
    },
    {
      "version": "1.5.2",
      "date": "2021-01-08"
    },
    {
      "version": "1.5.3",
      "date": "2021-07-07"
    },
    {
      "version": "1.5.4",
      "date": "2021-09-03"
    },
    {
      "version": "1.5.5",
      "date": "2022-10-18"
    },
    {
      "version": "1.5.6",
      "date": "2025-07-21"
    },
    {
      "version": "1.5.7",
      "date": "2025-10-21"
    },
    {
      "version": "1.5.8",
      "date": "2025-11-25"
    }
  ],
  "_exports": [
    "AICweights",
    "checkPar0",
    "CIbeta",
    "circAngles",
    "CIreal",
    "crawlMerge",
    "crawlWrap",
    "fitHMM",
    "formatHierHMM",
    "getPar",
    "getPar0",
    "getParDM",
    "getTrProbs",
    "MIfitHMM",
    "MIpool",
    "mixtureProbs",
    "plotPR",
    "plotSat",
    "plotSpatialCov",
    "plotStates",
    "plotStationary",
    "prepData",
    "pseudoRes",
    "randomEffects",
    "setModelName",
    "setStateNames",
    "simData",
    "simHierData",
    "simObsData",
    "stateProbs",
    "stationary",
    "timeInStates",
    "viterbi"
  ],
  "_datasets": [
    {
      "name": "example",
      "title": "Example dataset",
      "object": "example",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "forest",
      "title": "Example dataset",
      "object": "forest",
      "class": [
        "RasterLayer"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "miExample",
      "title": "Example dataset",
      "object": "miExample",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "AIC.momentuHMM",
      "title": "AIC",
      "topics": [
        "AIC.momentuHMM"
      ]
    },
    {
      "page": "AICweights",
      "title": "Calculate Akaike information criterion model weights",
      "topics": [
        "AICweights"
      ]
    },
    {
      "page": "allProbs",
      "title": "Matrix of all probabilities",
      "topics": [
        "allProbs"
      ]
    },
    {
      "page": "checkPar0",
      "title": "Check parameter length and order for a 'fitHMM' (or 'MIfitHMM') model",
      "topics": [
        "checkPar0",
        "checkPar0.default",
        "checkPar0.hierarchical"
      ]
    },
    {
      "page": "CIbeta",
      "title": "Confidence intervals for working (i.e., beta) parameters",
      "topics": [
        "CIbeta"
      ]
    },
    {
      "page": "circAngles",
      "title": "Convert standard direction angles (in radians relative to the x-axis) to turning angle covariates suitable for circular-circular regression on the angle mean",
      "topics": [
        "circAngles"
      ]
    },
    {
      "page": "CIreal",
      "title": "Confidence intervals for the natural (i.e., real) parameters",
      "topics": [
        "CIreal",
        "CIreal.default",
        "CIreal.hierarchical"
      ]
    },
    {
      "page": "crawlMerge",
      "title": "Merge crwData or crwHierData object with additional data streams and/or covariates",
      "topics": [
        "crawlMerge"
      ]
    },
    {
      "page": "crawlWrap",
      "title": "Fit and predict tracks for using crawl",
      "topics": [
        "crawlWrap"
      ]
    },
    {
      "page": "crwData",
      "title": "Constructor of 'crwData' objects",
      "topics": [
        "crwData"
      ]
    },
    {
      "page": "crwHierData",
      "title": "Constructor of 'crwHierData' objects",
      "topics": [
        "crwHierData"
      ]
    },
    {
      "page": "crwHierSim",
      "title": "Constructor of 'crwHierSim' objects",
      "topics": [
        "crwHierSim"
      ]
    },
    {
      "page": "crwSim",
      "title": "Constructor of 'crwSim' objects",
      "topics": [
        "crwSim"
      ]
    },
    {
      "page": "dbern_rcpp",
      "title": "Bernoulli density function",
      "topics": [
        "dbern_rcpp"
      ]
    },
    {
      "page": "dbeta_rcpp",
      "title": "Probability density function of the beta distribution (written in C++)",
      "topics": [
        "dbeta_rcpp"
      ]
    },
    {
      "page": "dcat_rcpp",
      "title": "Categorical density function",
      "topics": [
        "dcat_rcpp"
      ]
    },
    {
      "page": "dexp_rcpp",
      "title": "Exponential density function",
      "topics": [
        "dexp_rcpp"
      ]
    },
    {
      "page": "dgamma_rcpp",
      "title": "Gamma density function",
      "topics": [
        "dgamma_rcpp"
      ]
    },
    {
      "page": "distAngle",
      "title": "Calculate distance between points y and z and turning angle between points x, y, and z",
      "topics": [
        "distAngle"
      ]
    },
    {
      "page": "dlnorm_rcpp",
      "title": "Log-normal density function",
      "topics": [
        "dlnorm_rcpp"
      ]
    },
    {
      "page": "dlogis_rcpp",
      "title": "logistic density function",
      "topics": [
        "dlogis_rcpp"
      ]
    },
    {
      "page": "dmvnorm_rcpp",
      "title": "C++ implementation of multivariate Normal probability density function for multiple inputs",
      "topics": [
        "dmvnorm_rcpp"
      ]
    },
    {
      "page": "dnbinom_rcpp",
      "title": "negative binomial density function",
      "topics": [
        "dnbinom_rcpp"
      ]
    },
    {
      "page": "dnorm_rcpp",
      "title": "Normal density function",
      "topics": [
        "dnorm_rcpp"
      ]
    },
    {
      "page": "dpois_rcpp",
      "title": "Poisson density function",
      "topics": [
        "dpois_rcpp"
      ]
    },
    {
      "page": "dt_rcpp",
      "title": "student t density function",
      "topics": [
        "dt_rcpp"
      ]
    },
    {
      "page": "dvm_rcpp",
      "title": "Von Mises density function",
      "topics": [
        "dvm_rcpp"
      ]
    },
    {
      "page": "dweibull_rcpp",
      "title": "Weibull density function",
      "topics": [
        "dweibull_rcpp"
      ]
    },
    {
      "page": "dwrpcauchy_rcpp",
      "title": "Wrapped Cauchy density function",
      "topics": [
        "dwrpcauchy_rcpp"
      ]
    },
    {
      "page": "exampleData",
      "title": "Example dataset",
      "topics": [
        "example",
        "exampleData",
        "forest",
        "miExample"
      ]
    },
    {
      "page": "expandPar",
      "title": "Expand vector of free working parameters to vector of all working parameters including any fixed parameters (used in fitHMM.R and nLogLike.R)",
      "topics": [
        "expandPar"
      ]
    },
    {
      "page": "fitHMM",
      "title": "Fit a multivariate HMM to the data",
      "topics": [
        "fitHMM",
        "fitHMM.momentuHierHMMData",
        "fitHMM.momentuHMMData"
      ]
    },
    {
      "page": "formatHierHMM",
      "title": "Convert hierarchical HMM structure to a conventional HMM",
      "topics": [
        "formatHierHMM"
      ]
    },
    {
      "page": "getCovNames",
      "title": "Get names of any covariates used in probability distribution parameters",
      "topics": [
        "getCovNames"
      ]
    },
    {
      "page": "getDM_rcpp",
      "title": "Get design matrix",
      "topics": [
        "getDM_rcpp"
      ]
    },
    {
      "page": "getPar",
      "title": "Get starting values from momentuHMM, miHMM, or miSum object returned by fitHMM, MIfitHMM, or MIpool",
      "topics": [
        "getPar"
      ]
    },
    {
      "page": "getPar0",
      "title": "Get starting values for new model from existing 'momentuHMM' or 'momentuHierHMM' model fit",
      "topics": [
        "getPar0",
        "getPar0.default",
        "getPar0.hierarchical"
      ]
    },
    {
      "page": "getParDM",
      "title": "Get starting values on working scale based on design matrix and other parameter constraints",
      "topics": [
        "getParDM",
        "getParDM.default",
        "getParDM.hierarchical"
      ]
    },
    {
      "page": "getTrProbs",
      "title": "Transition probability matrix",
      "topics": [
        "getTrProbs",
        "getTrProbs.default",
        "getTrProbs.hierarchical"
      ]
    },
    {
      "page": "HMMfits",
      "title": "Constructor of 'HMMfits' objects",
      "topics": [
        "HMMfits"
      ]
    },
    {
      "page": "is.crwData",
      "title": "Is crwData",
      "topics": [
        "is.crwData"
      ]
    },
    {
      "page": "is.crwHierData",
      "title": "Is crwHierData",
      "topics": [
        "is.crwHierData"
      ]
    },
    {
      "page": "is.crwHierSim",
      "title": "Is crwHierSim",
      "topics": [
        "is.crwHierSim"
      ]
    },
    {
      "page": "is.crwSim",
      "title": "Is crwSim",
      "topics": [
        "is.crwSim"
      ]
    },
    {
      "page": "is.HMMfits",
      "title": "Is HMMfits",
      "topics": [
        "is.HMMfits"
      ]
    },
    {
      "page": "is.miHMM",
      "title": "Is miHMM",
      "topics": [
        "is.miHMM"
      ]
    },
    {
      "page": "is.miSum",
      "title": "Is miSum",
      "topics": [
        "is.miSum"
      ]
    },
    {
      "page": "is.momentuHierHMM",
      "title": "Is momentuHierHMM",
      "topics": [
        "is.momentuHierHMM"
      ]
    },
    {
      "page": "is.momentuHierHMMData",
      "title": "Is momentuHierHMMData",
      "topics": [
        "is.momentuHierHMMData"
      ]
    },
    {
      "page": "is.momentuHMM",
      "title": "Is momentuHMM",
      "topics": [
        "is.momentuHMM"
      ]
    },
    {
      "page": "is.momentuHMMData",
      "title": "Is momentuHMMData",
      "topics": [
        "is.momentuHMMData"
      ]
    },
    {
      "page": "logAlpha",
      "title": "Forward log-probabilities",
      "topics": [
        "logAlpha"
      ]
    },
    {
      "page": "logBeta",
      "title": "Backward log-probabilities",
      "topics": [
        "logBeta"
      ]
    },
    {
      "page": "MIfitHMM",
      "title": "Fit HMMs to multiple imputation data",
      "topics": [
        "MIfitHMM",
        "MIfitHMM.default",
        "MIfitHMM.hierarchical"
      ]
    },
    {
      "page": "miHMM",
      "title": "Constructor of 'miHMM' objects",
      "topics": [
        "miHMM"
      ]
    },
    {
      "page": "MIpool",
      "title": "Calculate pooled parameter estimates and states across multiple imputations",
      "topics": [
        "MIpool"
      ]
    },
    {
      "page": "miSum",
      "title": "Constructor of 'miSum' objects",
      "topics": [
        "miSum"
      ]
    },
    {
      "page": "mixtureProbs",
      "title": "Mixture probabilities",
      "topics": [
        "mixtureProbs"
      ]
    },
    {
      "page": "momentuHierHMM",
      "title": "Constructor of 'momentuHierHMM' objects",
      "topics": [
        "momentuHierHMM"
      ]
    },
    {
      "page": "momentuHierHMMData",
      "title": "Constructor of 'momentuHierHMMData' objects",
      "topics": [
        "momentuHierHMMData"
      ]
    },
    {
      "page": "momentuHMM",
      "title": "Constructor of 'momentuHMM' objects",
      "topics": [
        "momentuHMM"
      ]
    },
    {
      "page": "momentuHMMData",
      "title": "Constructor of 'momentuHMMData' objects",
      "topics": [
        "momentuHMMData"
      ]
    },
    {
      "page": "n2w",
      "title": "Scaling function: natural to working parameters.",
      "topics": [
        "n2w"
      ]
    },
    {
      "page": "nLogLike",
      "title": "Negative log-likelihood function",
      "topics": [
        "nLogLike"
      ]
    },
    {
      "page": "nLogLike_rcpp",
      "title": "Negative log-likelihood",
      "topics": [
        "nLogLike_rcpp"
      ]
    },
    {
      "page": "parDef",
      "title": "Parameters definition",
      "topics": [
        "parDef"
      ]
    },
    {
      "page": "plot.crwData",
      "title": "Plot 'crwData'",
      "topics": [
        "plot.crwData",
        "plot.crwHierData"
      ]
    },
    {
      "page": "plot.miHMM",
      "title": "Plot 'miHMM'",
      "topics": [
        "plot.miHMM"
      ]
    },
    {
      "page": "plot.miSum",
      "title": "Plot 'miSum'",
      "topics": [
        "plot.miSum"
      ]
    },
    {
      "page": "plot.momentuHMM",
      "title": "Plot 'momentuHMM'",
      "topics": [
        "plot.momentuHMM"
      ]
    },
    {
      "page": "plot.momentuHMMData",
      "title": "Plot 'momentuHMMData' or 'momentuHierHMMData'",
      "topics": [
        "plot.momentuHierHMMData",
        "plot.momentuHMMData"
      ]
    },
    {
      "page": "plotPR",
      "title": "Plot pseudo-residuals",
      "topics": [
        "plotPR"
      ]
    },
    {
      "page": "plotSat",
      "title": "Plot observations on satellite image",
      "topics": [
        "plotSat"
      ]
    },
    {
      "page": "plotSpatialCov",
      "title": "Plot observations on raster image",
      "topics": [
        "plotSpatialCov"
      ]
    },
    {
      "page": "plotStates",
      "title": "Plot states",
      "topics": [
        "plotStates"
      ]
    },
    {
      "page": "plotStationary",
      "title": "Plot stationary state probabilities",
      "topics": [
        "plotStationary"
      ]
    },
    {
      "page": "prepData",
      "title": "Preprocessing of the data streams and covariates",
      "topics": [
        "prepData",
        "prepData.default",
        "prepData.hierarchical"
      ]
    },
    {
      "page": "print.miHMM",
      "title": "Print 'miHMM'",
      "topics": [
        "print.miHMM"
      ]
    },
    {
      "page": "print.miSum",
      "title": "Print 'miSum'",
      "topics": [
        "print.miSum"
      ]
    },
    {
      "page": "print.momentuHMM",
      "title": "Print 'momentuHMM'",
      "topics": [
        "print.momentuHierHMM",
        "print.momentuHMM"
      ]
    },
    {
      "page": "pseudoRes",
      "title": "Pseudo-residuals",
      "topics": [
        "pseudoRes"
      ]
    },
    {
      "page": "randomEffects",
      "title": "Random effects estimation",
      "topics": [
        "randomEffects"
      ]
    },
    {
      "page": "setModelName",
      "title": "Set 'modelName' for a 'momentuHMM', 'miHMM', 'HMMfits', or 'miSum' object",
      "topics": [
        "setModelName"
      ]
    },
    {
      "page": "setStateNames",
      "title": "Set 'stateNames' for a 'momentuHMM', 'miHMM', 'HMMfits', or 'miSum' object",
      "topics": [
        "setStateNames"
      ]
    },
    {
      "page": "simData",
      "title": "Simulation tool",
      "topics": [
        "simData",
        "simHierData"
      ]
    },
    {
      "page": "simObsData",
      "title": "Observation error simulation tool",
      "topics": [
        "simObsData",
        "simObsData.momentuHierHMMData",
        "simObsData.momentuHMMData"
      ]
    },
    {
      "page": "stateProbs",
      "title": "State probabilities",
      "topics": [
        "stateProbs"
      ]
    },
    {
      "page": "stationary",
      "title": "Stationary state probabilities",
      "topics": [
        "stationary"
      ]
    },
    {
      "page": "summary.momentuHMMData",
      "title": "Summary 'momentuHMMData'",
      "topics": [
        "summary.momentuHierHMMData",
        "summary.momentuHMMData"
      ]
    },
    {
      "page": "timeInStates",
      "title": "Calculate proportion of time steps assigned to each state (i.e. \"activity budgets\")",
      "topics": [
        "timeInStates",
        "timeInStates.HMMfits",
        "timeInStates.miHMM",
        "timeInStates.momentuHMM"
      ]
    },
    {
      "page": "trMatrix_rcpp",
      "title": "Transition probability matrix",
      "topics": [
        "trMatrix_rcpp"
      ]
    },
    {
      "page": "turnAngle",
      "title": "Turning angle",
      "topics": [
        "turnAngle"
      ]
    },
    {
      "page": "viterbi",
      "title": "Viterbi algorithm",
      "topics": [
        "viterbi"
      ]
    },
    {
      "page": "w2n",
      "title": "Scaling function: working to natural parameters",
      "topics": [
        "w2n"
      ]
    },
    {
      "page": "XBloop_rcpp",
      "title": "Get XB",
      "topics": [
        "XBloop_rcpp"
      ]
    }
  ],
  "_readme": "https://github.com/cran/momentuHMM/raw/HEAD/README.md",
  "_rundeps": [
    "boot",
    "Brobdingnag",
    "CircStats",
    "class",
    "classInt",
    "cli",
    "codetools",
    "cpp11",
    "crawl",
    "DBI",
    "digest",
    "doParallel",
    "doRNG",
    "dplyr",
    "e1071",
    "foreach",
    "generics",
    "glue",
    "iterators",
    "KernSmooth",
    "lattice",
    "lifecycle",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "mvtnorm",
    "numDeriv",
    "pillar",
    "pkgconfig",
    "proxy",
    "purrr",
    "R6",
    "raster",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "rngtools",
    "s2",
    "sf",
    "sp",
    "terra",
    "tibble",
    "tidyselect",
    "timechange",
    "units",
    "utf8",
    "vctrs",
    "withr",
    "wk"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "momentuHMM.pdf.asis",
      "filename": "momentuHMM.pdf",
      "title": "Guide to using momentuHMM",
      "engine": "R.rsp::asis",
      "headings": [],
      "created": "2019-12-18 01:10:11",
      "modified": "2019-12-18 01:10:11",
      "commits": 1
    }
  ],
  "_score": 5.984437294796077,
  "_indexed": false,
  "_nocasepkg": "momentuhmm",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://bmcclintock.r-universe.dev/momentuHMM",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.5.8",
      "date": "2026-06-05T07:08:39.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b9f1eb645e5492f5ebd11565a9ff118c4d7627e8",
      "fileid": "e591fa5383dba07a712f05db2dba72d9e0a8dac5ed16825c4a84d0f07c36762a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000556586"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.5.8",
      "date": "2026-06-05T07:08:36.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b9f1eb645e5492f5ebd11565a9ff118c4d7627e8",
      "fileid": "4e9fb56a6668ae141c297da3e9df21fc226572cc77d20e88358e225a2b149afd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000556586"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.5.8",
      "date": "2026-06-05T07:08:39.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b9f1eb645e5492f5ebd11565a9ff118c4d7627e8",
      "fileid": "f766d2d7dd588fe25a6c75d035d8f4c79db84fc06119555d2f9e39a955c57cd4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000556586"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.5.8",
      "date": "2026-06-05T07:08:21.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b9f1eb645e5492f5ebd11565a9ff118c4d7627e8",
      "fileid": "7245ba4506240343f7b24dbfa3c913f61a50b06b2236bf3f90cd3804068adaf2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000556586"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.5.8",
      "date": "2026-06-05T07:08:58.000Z",
      "arch": "emscripten",
      "commit": "b9f1eb645e5492f5ebd11565a9ff118c4d7627e8",
      "fileid": "f24032dc82f11c4100083070964240f23f8e3e69482957bae374f5e14a8fb207",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000556586"
    }
  ]
}