{
  "_id": "6a228700cd65a98ecbd53516",
  "Encoding": "UTF-8",
  "Type": "Package",
  "Package": "mixsqp",
  "Version": "0.3-54",
  "Date": "2023-12-20",
  "Title": "Sequential Quadratic Programming for Fast Maximum-Likelihood\nEstimation of Mixture Proportions",
  "Authors@R": "c(person(\"Youngseok\",\"Kim\",role=\"aut\",\nemail=\"youngseok@uchicago.edu\"),\nperson(\"Peter\",\"Carbonetto\",role=c(\"aut\",\"cre\"),\nemail=\"peter.carbonetto@gmail.com\"),\nperson(\"Mihai\",\"Anitescu\",role=\"aut\"),\nperson(\"Matthew\",\"Stephens\",role=\"aut\"),\nperson(\"Jason\",\"Willwerscheid\",role=\"ctb\"),\nperson(\"Jean\",\"Morrison\",role=\"ctb\"))",
  "URL": "https://github.com/stephenslab/mixsqp",
  "BugReports": "https://github.com/stephenslab/mixsqp/issues",
  "Description": "Provides an optimization method based on sequential\nquadratic programming (SQP) for maximum likelihood estimation\nof the mixture proportions in a finite mixture model where the\ncomponent densities are known. The algorithm is expected to\nobtain solutions that are at least as accurate as the\nstate-of-the-art MOSEK interior-point solver (called by\nfunction \"KWDual\" in the 'REBayes' package), and they are\nexpected to arrive at solutions more quickly when the number of\nsamples is large and the number of mixture components is not\ntoo large. This implements the \"mix-SQP\" algorithm, with some\nimprovements, described in Y. Kim, P. Carbonetto, M. Stephens &\nM. Anitescu (2020) <DOI:10.1080/10618600.2019.1689985>.",
  "License": "MIT + file LICENSE",
  "LazyData": "true",
  "NeedsCompilation": "yes",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.1.2",
  "Packaged": {
    "Date": "2026-06-05 08:16:52 UTC",
    "User": "root"
  },
  "Author": "Youngseok Kim [aut], Peter Carbonetto [aut, cre], Mihai\nAnitescu [aut], Matthew Stephens [aut], Jason Willwerscheid\n[ctb], Jean Morrison [ctb]",
  "Maintainer": "Peter Carbonetto <peter.carbonetto@gmail.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2023-12-21 02:43:08 UTC",
  "RemoteUrl": "https://github.com/cran/mixsqp",
  "RemoteRef": "HEAD",
  "RemoteSha": "c8e49ae42dcd96d898c586da6b024298c92692ee",
  "MD5sum": "c70dcaf0ac3ba25059f829b335ba68ba",
  "_user": "cran",
  "_type": "src",
  "_file": "mixsqp_0.3-54.tar.gz",
  "_fileid": "66391ddc31c4fdc5fc78d0a3029ca255dfb1e45b68d06034dcd6998ec098f2ea",
  "_filesize": 396257,
  "_sha256": "66391ddc31c4fdc5fc78d0a3029ca255dfb1e45b68d06034dcd6998ec098f2ea",
  "_created": "2026-06-05T08:16:52.000Z",
  "_published": "2026-06-05T08:21:20.686Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79690410047,
      "time": 203,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7432045330"
    },
    {
      "job": 79690410056,
      "time": 161,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7432030841"
    },
    {
      "job": 79690410050,
      "time": 152,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7432030044"
    },
    {
      "job": 79690410076,
      "time": 140,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7432024992"
    },
    {
      "job": 79689795737,
      "time": 251,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7431983869"
    },
    {
      "job": 79690410029,
      "time": 138,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7432024398"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/27003630667",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/mixsqp",
  "_commit": {
    "id": "c8e49ae42dcd96d898c586da6b024298c92692ee",
    "author": "Peter Carbonetto <peter.carbonetto@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.3-54\n",
    "time": 1703126588
  },
  "_maintainer": {
    "name": "Peter Carbonetto",
    "email": "peter.carbonetto@gmail.com",
    "login": "pcarbo",
    "description": "Research Assistant Prof, Human Genetics, U. Chicago; previously, Staff Scientist at Ancestry, postdoc & HFSP fellow at U. Chicago, & Ph.D. at UBC",
    "uuid": 1503904
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "irlba",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.15",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 26,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "pcarbo",
      "count": 7,
      "uuid": 1503904
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 11478,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mixsqp"
  },
  "_devurl": "https://github.com/stephenslab/mixsqp",
  "_searchresults": 86,
  "_topics": [
    "openblas",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mixsqp.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/stephenslab/mixsqp",
  "_realowner": "stephenslab",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1-79",
      "date": "2018-11-14"
    },
    {
      "version": "0.1-97",
      "date": "2019-02-18"
    },
    {
      "version": "0.2-2",
      "date": "2019-10-16"
    },
    {
      "version": "0.3-17",
      "date": "2020-01-29"
    },
    {
      "version": "0.3-43",
      "date": "2020-05-14"
    },
    {
      "version": "0.3-48",
      "date": "2022-11-16"
    },
    {
      "version": "0.3-54",
      "date": "2023-12-20"
    }
  ],
  "_exports": [
    "mixobjective",
    "mixsqp",
    "mixsqp_control_default",
    "simulatemixdata"
  ],
  "_datasets": [
    {
      "name": "tacks",
      "title": "Beckett & Diaconis tack rolling example.",
      "object": "tacks",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "mixsqp-package",
      "title": "mixsqp: Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions",
      "topics": [
        "mixsqp-package"
      ]
    },
    {
      "page": "mixobjective",
      "title": "Compute objective optimized by mixsqp.",
      "topics": [
        "mixobjective"
      ]
    },
    {
      "page": "mixsqp",
      "title": "Maximum-likelihood estimation of mixture proportions using SQP",
      "topics": [
        "mixsqp",
        "mixsqp_control_default"
      ]
    },
    {
      "page": "simulatemixdata",
      "title": "Create likelihood matrix from simulated data set",
      "topics": [
        "simulatemixdata"
      ]
    },
    {
      "page": "tacks",
      "title": "Beckett & Diaconis tack rolling example.",
      "topics": [
        "tacks"
      ]
    }
  ],
  "_rundeps": [
    "irlba",
    "lattice",
    "Matrix",
    "Rcpp",
    "RcppArmadillo"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "mixsqp-intro.Rmd",
      "filename": "mixsqp-intro.html",
      "title": "Illustration of mixsqp applied to a small data set, and a large one",
      "author": "Youngseok Kim, Peter Carbonetto and Matthew Stephens",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Environment set-up",
        "Generate a small data set",
        "Fit mixture model",
        "Session information"
      ],
      "created": "2018-11-14 14:10:03",
      "modified": "2023-12-21 02:43:08",
      "commits": 4
    }
  ],
  "_score": 5.886459274344988,
  "_indexed": false,
  "_nocasepkg": "mixsqp",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://stephenslab.r-universe.dev/mixsqp",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3-54",
      "date": "2026-06-05T08:20:12.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "c8e49ae42dcd96d898c586da6b024298c92692ee",
      "fileid": "08a59587dceacfac7a1eab53aa26d7fc57c894f631043f89df83c16fb822dd20",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27003630667"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.3-54",
      "date": "2026-06-05T08:19:22.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "c8e49ae42dcd96d898c586da6b024298c92692ee",
      "fileid": "a84ad3e371939769d4e8698e69206130f4ad048951e1c1730594f789de8ef486",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27003630667"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3-54",
      "date": "2026-06-05T08:19:23.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "c8e49ae42dcd96d898c586da6b024298c92692ee",
      "fileid": "70a9d502839017b594ffe12d3c9dd91a91f87d2a55f5799a77519beab1b6c1e8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27003630667"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.3-54",
      "date": "2026-06-05T08:19:12.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "c8e49ae42dcd96d898c586da6b024298c92692ee",
      "fileid": "6f6018b895a4dd9250babadbae6b4060882013c5a10c52fba8ad47bfdf79895e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27003630667"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.3-54",
      "date": "2026-06-05T08:19:32.000Z",
      "arch": "emscripten",
      "commit": "c8e49ae42dcd96d898c586da6b024298c92692ee",
      "fileid": "e80e65e30dd86cad4f78b7657706bcede1ac57f117dacd74a7dab5970828be26",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27003630667"
    }
  ]
}