{
  "_id": "6a62a1ded3420cf5dfdb453d",
  "Package": "miniLNM",
  "Title": "Miniature Logistic-Normal Multinomial Models",
  "Version": "0.1.2",
  "Authors@R": "person(\"Kris\", \"Sankaran\", , \"ksankaran@wisc.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-9415-1971\"))",
  "Description": "Logistic-normal Multinomial (LNM) models are common in\nproblems with multivariate count data. This package gives a\nsimple implementation with a 30 line 'Stan' script. This\nlightweight implementation makes it an easy starting point for\nother projects, in particular for downstream tasks that require\nanalysis of \"compositional\" data. It can be applied whenever a\nmultinomial probability parameter is thought to depend linearly\non inputs in a transformed, log ratio space. Additional\nutilities make it easy to inspect, create predictions, and draw\nsamples using the fitted models. More about the LNM can be\nfound in Xia et al. (2013) \"A Logistic Normal Multinomial\nRegression Model for Microbiome Compositional Data Analysis\"\n<doi:10.1111/biom.12079> and Sankaran and Holmes (2023)\n\"Generative Models: An Interdisciplinary Perspective\"\n<doi:10.1146/annurev-statistics-033121-110134>.",
  "License": "CC0",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "Biarch": "true",
  "SystemRequirements": "GNU make",
  "BugReports": "https://github.com/krisrs1128/miniLNM/issues/",
  "URL": "https://github.com/krisrs1128/miniLNM/,\nhttps://krisrs1128.github.io/miniLNM/",
  "Config/testthat/edition": "3",
  "Config/roxygen2/version": "8.0.0",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-23 23:09:40 UTC",
    "User": "root"
  },
  "Author": "Kris Sankaran [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-9415-1971>)",
  "Maintainer": "Kris Sankaran <ksankaran@wisc.edu>",
  "Config/pak/sysreqs": "make",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-07-21 02:40:02 UTC",
  "RemoteUrl": "https://github.com/cran/miniLNM",
  "RemoteRef": "HEAD",
  "RemoteSha": "5cbbb888be77bcddca42f033c5c897c878aec083",
  "_user": "cran",
  "_type": "src",
  "_file": "miniLNM_0.1.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/275916c98bfe58847c622acdf5b17c910885932cd110c1eae82619ec7b09e287",
  "_filesize": 290246,
  "_sha256": "275916c98bfe58847c622acdf5b17c910885932cd110c1eae82619ec7b09e287",
  "_expires": "2026-10-31T23:21:00.000Z",
  "_created": "2026-07-23T23:09:40.000Z",
  "_published": "2026-07-23T23:21:01.945Z",
  "_jobs": [
    {
      "job": 89356984371,
      "time": 257,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8581635250"
    },
    {
      "job": 89356984385,
      "time": 251,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "8581633225"
    },
    {
      "job": 89356984395,
      "time": 239,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8581630536"
    },
    {
      "job": 89356984402,
      "time": 295,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8581646742"
    },
    {
      "job": 89356116694,
      "time": 326,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8581486857"
    },
    {
      "job": 89356984289,
      "time": 187,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8581613193"
    },
    {
      "job": 89356984335,
      "time": 439,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8581671966"
    },
    {
      "job": 89356984318,
      "time": 274,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8581579200"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/30052069907",
  "_status": "success",
  "_upstream": "https://github.com/cran/miniLNM",
  "_commit": {
    "id": "5cbbb888be77bcddca42f033c5c897c878aec083",
    "author": "Kris Sankaran <ksankaran@wisc.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.2\n",
    "time": 1784601602
  },
  "_maintainer": {
    "name": "Kris Sankaran",
    "email": "ksankaran@wisc.edu",
    "login": "krisrs1128",
    "description": "",
    "uuid": 2264333,
    "orcid": "0000-0002-9415-1971"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "BH",
      "version": ">= 1.66.0",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.0",
      "role": "LinkingTo"
    },
    {
      "package": "RcppEigen",
      "version": ">= 0.3.3.3.0",
      "role": "LinkingTo"
    },
    {
      "package": "RcppParallel",
      "version": ">= 5.0.1",
      "role": "LinkingTo"
    },
    {
      "package": "rstan",
      "version": ">= 2.18.1",
      "role": "LinkingTo"
    },
    {
      "package": "StanHeaders",
      "version": ">= 2.18.0",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.0",
      "role": "Imports"
    },
    {
      "package": "RcppParallel",
      "version": ">= 5.0.1",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "fansi",
      "role": "Imports"
    },
    {
      "package": "formula.tools",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "posterior",
      "role": "Imports"
    },
    {
      "package": "rstan",
      "version": ">= 2.18.1",
      "role": "Imports"
    },
    {
      "package": "rstantools",
      "version": ">= 2.4.0",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2026-30",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.2",
      "date": "2026-07-21"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "krisrs1128",
      "count": 2,
      "uuid": 2264333
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 623,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 376,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/miniLNM"
  },
  "_devurl": "https://github.com/krisrs1128/minilnm",
  "_pkgdown": "https://krisrs1128.github.io/miniLNM/",
  "_searchresults": 6,
  "_topics": [
    "onetbb",
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/miniLNM.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/krisrs1128/minilnm",
  "_realowner": "krisrs1128",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2024-09-13"
    },
    {
      "version": "0.1.2",
      "date": "2026-07-21"
    }
  ],
  "_exports": [
    "ansi_aware_handler",
    "beta_mean",
    "beta_samples",
    "lnm",
    "lnm_data",
    "phi_inverse",
    "predict",
    "prepare_newdata",
    "sample"
  ],
  "_help": [
    {
      "page": "ansi_aware_handler",
      "title": "Pretty Printing",
      "topics": [
        "ansi_aware_handler"
      ]
    },
    {
      "page": "beta_mean",
      "title": "LNM Posterior Mean",
      "topics": [
        "beta_mean"
      ]
    },
    {
      "page": "beta_samples",
      "title": "LNM Posterior Samples",
      "topics": [
        "beta_samples"
      ]
    },
    {
      "page": "lnm",
      "title": "Fit a logistic normal multinomial model using R's formula interface.",
      "topics": [
        "lnm"
      ]
    },
    {
      "page": "lnm_data",
      "title": "Simulates data from a Logistic Normal Multinomial Model.",
      "topics": [
        "lnm_data"
      ]
    },
    {
      "page": "lnm-class",
      "title": "S4 Class for a Logistic Normal Multinomial Model",
      "topics": [
        "lnm-class"
      ]
    },
    {
      "page": "phi_inverse",
      "title": "Inverse log ratio transformation",
      "topics": [
        "phi_inverse"
      ]
    },
    {
      "page": "predict-lnm-method",
      "title": "LNM Fitted Probabilities",
      "topics": [
        "predict,lnm-method"
      ]
    },
    {
      "page": "prepare_newdata",
      "title": "Design Matrix for a Model",
      "topics": [
        "prepare_newdata"
      ]
    },
    {
      "page": "sample-lnm-method",
      "title": "LNM Fitted Probabilities",
      "topics": [
        "sample,lnm-method"
      ]
    }
  ],
  "_readme": "https://github.com/cran/miniLNM/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "backports",
    "BH",
    "callr",
    "checkmate",
    "cli",
    "cpp11",
    "desc",
    "distributional",
    "dplyr",
    "fansi",
    "farver",
    "formula.tools",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "inline",
    "isoband",
    "labeling",
    "lifecycle",
    "loo",
    "magrittr",
    "matrixStats",
    "numDeriv",
    "operator.tools",
    "otel",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "posterior",
    "processx",
    "ps",
    "QuickJSR",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "RcppParallel",
    "rlang",
    "rstan",
    "rstantools",
    "S7",
    "scales",
    "StanHeaders",
    "tensorA",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libtbb",
      "package": "libtbb12",
      "headers": "libtbb-dev",
      "source": "onetbb",
      "version": "2022.3.0-2",
      "name": "onetbb",
      "homepage": "https://uxlfoundation.github.io/oneTBB/",
      "description": "parallelism library for C++ - runtime files"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "demo.Rmd",
      "filename": "demo.html",
      "title": "Example on Simulated Data",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2024-09-14 02:53:08",
      "modified": "2024-09-14 02:53:08",
      "commits": 1
    }
  ],
  "_score": 3.1760912590556813,
  "_indexed": false,
  "_nocasepkg": "minilnm",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://krisrs1128.r-universe.dev/miniLNM",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-07-23T23:16:30.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "5cbbb888be77bcddca42f033c5c897c878aec083",
      "fileid": "https://r2.ropensci.org/337ee4df7229b9090c7242319a79437e8e7410f1943bd8457125e5b87c250170",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30052069907"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-07-23T23:16:35.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "5cbbb888be77bcddca42f033c5c897c878aec083",
      "fileid": "https://r2.ropensci.org/dddcef2aa386b32042e09c74944ca46205cbb630e6c9faa8040df0eea5a38777",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30052069907"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-07-23T23:16:23.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "5cbbb888be77bcddca42f033c5c897c878aec083",
      "fileid": "https://r2.ropensci.org/ae777ce0e72f037454b5aad5b48b4700574f7b6dc5fb22e4a6f88a953db72eb5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30052069907"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-07-23T23:16:49.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "5cbbb888be77bcddca42f033c5c897c878aec083",
      "fileid": "https://r2.ropensci.org/38d610546b15f1f79ded1bab0805394b137d42530a4d3f2e98b3a31b6ccf8e7f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30052069907"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.2",
      "date": "2026-07-23T23:16:46.000Z",
      "arch": "emscripten",
      "commit": "5cbbb888be77bcddca42f033c5c897c878aec083",
      "fileid": "https://r2.ropensci.org/6cac2639ebf0dceeba0942eb05c16d35e71780bf302e797e4bce32215cad34ca",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30052069907"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-07-23T23:16:53.000Z",
      "arch": "aarch64",
      "commit": "5cbbb888be77bcddca42f033c5c897c878aec083",
      "fileid": "https://r2.ropensci.org/b099794706923dc4dd6eea795b05a195ca682243d72b6dbaf395d862f63c3188",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30052069907"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-07-23T23:12:39.000Z",
      "arch": "x86_64",
      "commit": "5cbbb888be77bcddca42f033c5c897c878aec083",
      "fileid": "https://r2.ropensci.org/8f6e71bb71ae160d2d7c9519c20f6ede14406cedacc65ddd981f27b70f45ae66",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30052069907"
    }
  ]
}