{
  "_id": "6abb85f099f7aa8c6aa45673",
  "Package": "mcen",
  "Type": "Package",
  "Title": "Multivariate Cluster Elastic Net",
  "Version": "1.2.1",
  "Date": "2023-03-22",
  "Author": "Ben Sherwood [aut, cre], Brad Price [aut]",
  "Maintainer": "Ben Sherwood <ben.sherwood@ku.edu>",
  "Description": "Fits the Multivariate Cluster Elastic Net (MCEN) presented\nin Price & Sherwood (2018) <arXiv:1707.03530>. The MCEN model\nsimultaneously estimates regression coefficients and a\nclustering of the responses for a multivariate response model.\nCurrently accommodates the Gaussian and binomial likelihood.",
  "ByteCompile": "TRUE",
  "License": "MIT + file LICENSE",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-09-29 09:28:58 UTC",
    "User": "root"
  },
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2023-03-22 21:10:08 UTC",
  "RemoteUrl": "https://github.com/cran/mcen",
  "RemoteRef": "HEAD",
  "RemoteSha": "6f2675fd90038d853bc510baedb20170ffd6be3b",
  "_user": "cran",
  "_type": "src",
  "_file": "mcen_1.2.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/09910f791ec02a6da18628c80bc9b4573275a1ebc5dff6a68d0e24157f7385b3",
  "_filesize": 136422,
  "_sha256": "09910f791ec02a6da18628c80bc9b4573275a1ebc5dff6a68d0e24157f7385b3",
  "_expires": "2027-01-07T09:33:34.000Z",
  "_created": "2026-09-29T09:28:58.000Z",
  "_published": "2026-09-29T09:33:35.956Z",
  "_jobs": [
    {
      "job": 109343911719,
      "time": 122,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11024097910"
    },
    {
      "job": 109343911640,
      "time": 141,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11023943076"
    },
    {
      "job": 109343911680,
      "time": 115,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11024340151"
    },
    {
      "job": 109343911678,
      "time": 124,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11023882753"
    },
    {
      "job": 109342376557,
      "time": 255,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11024062570"
    },
    {
      "job": 109343911623,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11024007984"
    },
    {
      "job": 109343911531,
      "time": 193,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11024266584"
    },
    {
      "job": 109343911468,
      "time": 134,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11023918147"
    },
    {
      "job": 109343911479,
      "time": 224,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11024237080"
    },
    {
      "job": 109343911700,
      "time": 132,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11023204112"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047",
  "_status": "success",
  "_upstream": "https://github.com/cran/mcen",
  "_commit": {
    "id": "6f2675fd90038d853bc510baedb20170ffd6be3b",
    "author": "Ben Sherwood <ben.sherwood@ku.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.2.1\n",
    "time": 1679519408
  },
  "_maintainer": {
    "name": "Ben Sherwood",
    "email": "ben.sherwood@ku.edu"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "glmnet",
      "role": "Depends"
    },
    {
      "package": "flexclust",
      "role": "Depends"
    },
    {
      "package": "Matrix",
      "role": "Depends"
    },
    {
      "package": "parallel",
      "role": "Depends"
    },
    {
      "package": "faraway",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 630,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 305,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mcen"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/mcen.html",
    "LICENSE"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2018-06-15"
    },
    {
      "version": "1.1",
      "date": "2020-06-22"
    },
    {
      "version": "1.2",
      "date": "2020-07-23"
    },
    {
      "version": "1.2.1",
      "date": "2023-03-22"
    }
  ],
  "_exports": [
    "cluster.vals",
    "cv.mcen",
    "get_best_cvm",
    "mcen"
  ],
  "_help": [
    {
      "page": "beta_adjust",
      "title": "Adjusts the value of the coefficients to account for the scaling of x and y.",
      "topics": [
        "beta_adjust"
      ]
    },
    {
      "page": "beta_adjust_bin",
      "title": "Adjusts the value of the binomial coefficients to account for the scaling of x.",
      "topics": [
        "beta_adjust_bin"
      ]
    },
    {
      "page": "bin_horse",
      "title": "The workhorse function for the binomial updates in mcen.  It uses IRWLS glmnet updates to solve the regression problem.",
      "topics": [
        "bin_horse"
      ]
    },
    {
      "page": "CalcHorseBin",
      "title": "Creates the the working response for all responses for glmnet binomial family",
      "topics": [
        "CalcHorseBin"
      ]
    },
    {
      "page": "CalcHorseEBin",
      "title": "Creates the probabilities and working response for the glmnet update for a given response with a binomial family",
      "topics": [
        "CalcHorseEBin"
      ]
    },
    {
      "page": "cluster",
      "title": "Wrapper function for different clustering methods",
      "topics": [
        "cluster"
      ]
    },
    {
      "page": "cluster.vals",
      "title": "Returns the cluster values from a cv.mcen object.",
      "topics": [
        "cluster.vals"
      ]
    },
    {
      "page": "coef.cv.mcen",
      "title": "Returns the coefficients from the cv.mcen object with the smallest cross-validation error.",
      "topics": [
        "coef.cv.mcen"
      ]
    },
    {
      "page": "coef.mcen",
      "title": "Returns the coefficients from an mcen object.",
      "topics": [
        "coef.mcen"
      ]
    },
    {
      "page": "cv.mcen",
      "title": "Cross validation for mcen function",
      "topics": [
        "cv.mcen"
      ]
    },
    {
      "page": "get_best_cvm",
      "title": "Gets the index position for the model with the smallest cross-validation error.",
      "topics": [
        "get_best_cvm"
      ]
    },
    {
      "page": "matrix_multiply",
      "title": "matrix multiply",
      "topics": [
        "matrix_multiply"
      ]
    },
    {
      "page": "mcen",
      "title": "Fits an MCEN model",
      "topics": [
        "mcen"
      ]
    },
    {
      "page": "mcen_bin_workhorse",
      "title": "Calculates cluster assignment and coefficient estimates for a binomial mcen.",
      "topics": [
        "mcen_bin_workhorse"
      ]
    },
    {
      "page": "mcen_workhorse",
      "title": "Estimates the clusters and provides the coefficients for an mcen object",
      "topics": [
        "mcen_workhorse"
      ]
    },
    {
      "page": "mcen.init",
      "title": "Provides initial estimates for the mcen functionF",
      "topics": [
        "mcen.init"
      ]
    },
    {
      "page": "pred_eval",
      "title": "Calculates the out of sample likelihood for an mcen object",
      "topics": [
        "pred_eval"
      ]
    },
    {
      "page": "pred_eval.mbinom_mcen",
      "title": "Evaluates prediction error for multiple binomial responses.",
      "topics": [
        "pred_eval.mbinom_mcen"
      ]
    },
    {
      "page": "pred_eval.mgauss_mcen",
      "title": "Calculates the prediction error for a mgauss_mcen object.",
      "topics": [
        "pred_eval.mgauss_mcen"
      ]
    },
    {
      "page": "predict.cv.mcen",
      "title": "Makes predictions from the model with the smallest cross-validation error.",
      "topics": [
        "predict.cv.mcen"
      ]
    },
    {
      "page": "predict.mcen",
      "title": "predictions from a mcen model",
      "topics": [
        "predict.mcen"
      ]
    },
    {
      "page": "print.cv.mcen",
      "title": "Prints nice output for a cv.mcen object.",
      "topics": [
        "print.cv.mcen"
      ]
    },
    {
      "page": "print.mcen",
      "title": "Prints nice output for an mcen object.",
      "topics": [
        "print.mcen"
      ]
    },
    {
      "page": "randomly_assign",
      "title": "randomly assign n samples to k groups",
      "topics": [
        "randomly_assign"
      ]
    },
    {
      "page": "SetEq",
      "title": "SetEq test set equivalence of two clustering sets",
      "topics": [
        "SetEq"
      ]
    },
    {
      "page": "squared_error",
      "title": "Calculates sum of squared error between two vectors or matrices",
      "topics": [
        "squared_error"
      ]
    },
    {
      "page": "vl_binom",
      "title": "Calculates out of sample error on the binomial likelihood",
      "topics": [
        "vl_binom"
      ]
    }
  ],
  "_rundeps": [
    "boot",
    "class",
    "codetools",
    "faraway",
    "flexclust",
    "foreach",
    "glmnet",
    "iterators",
    "lattice",
    "lme4",
    "MASS",
    "Matrix",
    "minqa",
    "modeltools",
    "nlme",
    "nloptr",
    "rbibutils",
    "Rcpp",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "shape",
    "survival"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "mcen",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.1",
      "date": "2026-09-29T09:31:00.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "6f2675fd90038d853bc510baedb20170ffd6be3b",
      "fileid": "https://r2.ropensci.org/39b2ee6569695f29327db90b87e76220e9ef75413f3726324c8332fdf19e00bf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.1",
      "date": "2026-09-29T09:31:06.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "6f2675fd90038d853bc510baedb20170ffd6be3b",
      "fileid": "https://r2.ropensci.org/a283c36554e021feb209d8ebdfa57b69d1a2b4bb154a83d17f700fd472898ff3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.2.1",
      "date": "2026-09-29T09:30:55.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "6f2675fd90038d853bc510baedb20170ffd6be3b",
      "fileid": "https://r2.ropensci.org/90263c2bde3d1bbbc78ed8a158e5ae0d92000811119a975d7d0df42871a8f6c8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.2.1",
      "date": "2026-09-29T09:31:00.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "6f2675fd90038d853bc510baedb20170ffd6be3b",
      "fileid": "https://r2.ropensci.org/559e147e65e6354a98fbf58f58b35999bbc0186a01d217aecd0bf9c35dd4db95",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.1",
      "date": "2026-09-29T09:31:12.000Z",
      "arch": "emscripten",
      "commit": "6f2675fd90038d853bc510baedb20170ffd6be3b",
      "fileid": "https://r2.ropensci.org/5b92663036f3a05a3b8de713749467e1ef144d6e23875f6633e03edd10642318",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.1",
      "date": "2026-09-29T09:31:56.000Z",
      "arch": "aarch64",
      "commit": "6f2675fd90038d853bc510baedb20170ffd6be3b",
      "fileid": "https://r2.ropensci.org/4bfe6dc0a974bf31e43bdbe33fc9af403c2cca31e5402b99670c2111ebfbd1eb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.1",
      "date": "2026-09-29T09:30:16.000Z",
      "arch": "x86_64",
      "commit": "6f2675fd90038d853bc510baedb20170ffd6be3b",
      "fileid": "https://r2.ropensci.org/75e966f8be4ee41ac0a96e48edf42da9cdeb81b0d7b8e7e093bdb4fabda59630",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.2.1",
      "date": "2026-09-29T09:32:32.000Z",
      "arch": "aarch64",
      "commit": "6f2675fd90038d853bc510baedb20170ffd6be3b",
      "fileid": "https://r2.ropensci.org/dde785960d98a8a94b5a177e4ebed4b4289291c13852e4daf345a8dafa6ad427",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.2.1",
      "date": "2026-09-29T09:30:30.000Z",
      "arch": "x86_64",
      "commit": "6f2675fd90038d853bc510baedb20170ffd6be3b",
      "fileid": "https://r2.ropensci.org/7a7ed52a98f0ee84b0f477745f8aa05c2bb9c4e56991a8d2fcbdf1a053d78d97",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36548992047"
    }
  ]
}