{
  "_id": "6a13f6baacfb0bcc41d33434",
  "Package": "mastif",
  "Type": "Package",
  "Title": "Mast Inference and Forecasting",
  "Version": "2.4",
  "Date": "2026-3-25",
  "Authors@R": "person(given = c(\"James\", \"S.\"),\nfamily = \"Clark\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jimclark@duke.edu\")",
  "Description": "Analyzes production and dispersal of seeds dispersed from\ntrees and recovered in seed traps.  Motivated by long-term\ninventory plots where seed collections are used to infer seed\nproduction by each individual plant.",
  "License": "GPL (>= 2)",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-25 07:09:27 UTC",
    "User": "root"
  },
  "Author": "James S. Clark [aut, cre]",
  "Maintainer": "James S. Clark <jimclark@duke.edu>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-03-26 17:33:21 UTC",
  "RemoteUrl": "https://github.com/cran/mastif",
  "RemoteRef": "HEAD",
  "RemoteSha": "b0e65e629bebb502c1d22791f9b1b5cf279e28bf",
  "MD5sum": "943f45233b62994540d92385e5fa6c6f",
  "_user": "cran",
  "_type": "src",
  "_file": "mastif_2.4.tar.gz",
  "_fileid": "f1f2e05e0fb759be4d001010e207711df11c3a71a69b4e3f64babde244c1fd33",
  "_filesize": 422875,
  "_sha256": "f1f2e05e0fb759be4d001010e207711df11c3a71a69b4e3f64babde244c1fd33",
  "_created": "2026-05-25T07:09:27.000Z",
  "_published": "2026-05-25T07:14:02.819Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77671524408,
      "time": 182,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7193456168"
    },
    {
      "job": 77671524454,
      "time": 180,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7193455751"
    },
    {
      "job": 77671524580,
      "time": 214,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7193463101"
    },
    {
      "job": 77671524486,
      "time": 177,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7193455198"
    },
    {
      "job": 77671077124,
      "time": 245,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7193414363"
    },
    {
      "job": 77671524386,
      "time": 123,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7193442261"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26388077567",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/mastif",
  "_commit": {
    "id": "b0e65e629bebb502c1d22791f9b1b5cf279e28bf",
    "author": "James S. Clark <jimclark@duke.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2.4\n",
    "time": 1774546401
  },
  "_maintainer": {
    "name": "James S. Clark",
    "email": "jimclark@duke.edu",
    "login": "jimclarkatduke",
    "description": "Nicholas Professor\nNicholas School of the Environment\nDepartment of Statistical Science\n",
    "uuid": 16857645
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.11.5",
      "role": "Imports"
    },
    {
      "package": "RANN",
      "role": "Imports"
    },
    {
      "package": "cluster",
      "role": "Imports"
    },
    {
      "package": "corrplot",
      "role": "Imports"
    },
    {
      "package": "xtable",
      "role": "Imports"
    },
    {
      "package": "repmis",
      "role": "Imports"
    },
    {
      "package": "robustbase",
      "role": "Imports"
    },
    {
      "package": "stringi",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "fullRankMatrix",
      "role": "Imports"
    },
    {
      "package": "TruncatedNormal",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-13",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "2.4",
      "date": "2026-03-26"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "jimclarkatduke",
      "count": 7,
      "uuid": 16857645
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 244,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mastif"
  },
  "_searchresults": 0,
  "_topics": [
    "openblas",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mastif.html",
    "manual.pdf"
  ],
  "_realowner": "jimclarkatduke",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2019-05-20"
    },
    {
      "version": "1.0.1",
      "date": "2020-10-25"
    },
    {
      "version": "2.0",
      "date": "2023-01-27"
    },
    {
      "version": "2.1",
      "date": "2024-01-23"
    },
    {
      "version": "2.2",
      "date": "2024-02-16"
    },
    {
      "version": "2.3",
      "date": "2024-03-28"
    },
    {
      "version": "2.4",
      "date": "2026-03-26"
    }
  ],
  "_exports": [
    "mastClimate",
    "mastFillCensus",
    "mastif",
    "mastMap",
    "mastPlot",
    "mastPriors",
    "mastSim",
    "mastSpectralDensity",
    "mastVolatility"
  ],
  "_help": [
    {
      "page": "mastif-package",
      "title": "Mast Inference and Forecasting",
      "concept": [
        "ecology",
        "Bayesian analysis",
        "seed production",
        "source detection",
        "hierarchical Bayes",
        "Gibbs sampling",
        "Hamiltonian Markov chain",
        "seed dispersal",
        "tree fecundity",
        "masting",
        "autoregressive model",
        "state-space model",
        "prediction"
      ],
      "topics": [
        "mastif-package"
      ]
    },
    {
      "page": "mastClimate",
      "title": "Covariates for mast data",
      "topics": [
        "mastClimate"
      ]
    },
    {
      "page": "mastFillCensus",
      "title": "Interpolate census data for seed trap years",
      "topics": [
        "mastFillCensus"
      ]
    },
    {
      "page": "mastif",
      "title": "Gibbs sampler for mast data",
      "topics": [
        "mastif",
        "print.mastif",
        "summary.mastif"
      ]
    },
    {
      "page": "mastMap",
      "title": "Map data and predictions for mastif model",
      "topics": [
        "mastMap"
      ]
    },
    {
      "page": "mastPlot",
      "title": "Plot mast model",
      "topics": [
        "mastPlot"
      ]
    },
    {
      "page": "mastPriors",
      "title": "Obtain prior parameter values for mastif from file",
      "topics": [
        "mastPriors"
      ]
    },
    {
      "page": "mastSim",
      "title": "Data simulation for mast model",
      "topics": [
        "mastSim"
      ]
    },
    {
      "page": "mastSpectralDensity",
      "title": "Volatility and period for mast data",
      "topics": [
        "mastSpectralDensity"
      ]
    },
    {
      "page": "mastVolatility",
      "title": "Volatility and period for mast data, combining trees in populations",
      "topics": [
        "mastVolatility"
      ]
    }
  ],
  "_rundeps": [
    "alabama",
    "askpass",
    "cli",
    "cluster",
    "corrplot",
    "curl",
    "data.table",
    "DEoptimR",
    "digest",
    "fullRankMatrix",
    "glue",
    "httr",
    "jsonlite",
    "lifecycle",
    "magrittr",
    "mime",
    "nleqslv",
    "numDeriv",
    "openssl",
    "pillar",
    "pkgconfig",
    "plyr",
    "qrng",
    "R.cache",
    "R.methodsS3",
    "R.oo",
    "R.utils",
    "R6",
    "RANN",
    "Rcpp",
    "RcppArmadillo",
    "repmis",
    "rlang",
    "robustbase",
    "spacefillr",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "TruncatedNormal",
    "utf8",
    "vctrs",
    "xtable"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "mastifVignette.Rmd",
      "filename": "mastifVignette.html",
      "title": "Mast Inference and Forecasting ( mastif )",
      "author": "James S. Clark",
      "engine": "knitr::rmarkdown",
      "headings": [
        "citation:",
        "<span style=\"color:darkgreen\">summary</span>",
        "<span style=\"color:darkgreen\">mastif inputs</span>",
        "<span style=\"color:darkgreen\">simulated data</span>",
        "<span style=\"color:teal\">mastSim</span>",
        "<span style=\"color:teal\">treeData and xytree</span>",
        "<span style=\"color:teal\">data summary and maps</span>",
        "<span style=\"color:teal\">model fitting</span>",
        "<span style=\"color:teal\">output summary, lists, and plots</span>",
        "<span style=\"color:brown\">estimates, and predictions in output</span>",
        "<span style=\"color:brown\">plots of output</span>",
        "<span style=\"color:teal\">slow convergence?</span>",
        "<span style=\"color:teal\">multiple seed types per species</span>",
        "<span style=\"color:teal\">specNames and seedNames</span>",
        "<span style=\"color:brown\">mastPlot written to files</span>",
        "<span style=\"color:darkgreen\">my data</span>",
        "<span style=\"color:teal\">diameter effect</span>",
        "<span style=\"color:teal\">year and random effects</span>",
        "<span style=\"color:teal\">prior parameter values</span>",
        "<span style=\"color:teal\">maturation/fecundity data, if available</span>",
        "<span style=\"color:teal\">when trees are sampled less frequently than seeds</span>",
        "<span style=\"color:teal\">adding covariates</span>",
        "<span style=\"color:darkgreen\">flexibility</span>",
        "<span style=\"color:teal\">random individual effects</span>",
        "<span style=\"color:teal\">random groups for years and lags</span>",
        "<span style=\"color:teal\">random effects when there are multiple species</span>",
        "<span style=\"color:darkgreen\">convergence</span>",
        "<span style=\"color:darkgreen\">time series: volatility and periodicity</span>",
        "<span style=\"color:darkgreen\">trouble shooting</span>",
        "<span style=\"color:darkgreen\">references</span>"
      ],
      "created": "2019-05-20 09:20:04",
      "modified": "2026-03-26 17:33:21",
      "commits": 5
    }
  ],
  "_score": 2,
  "_indexed": false,
  "_nocasepkg": "mastif",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://jimclarkatduke.r-universe.dev/mastif",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.4",
      "date": "2026-05-25T07:12:06.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b0e65e629bebb502c1d22791f9b1b5cf279e28bf",
      "fileid": "0339ca0569faa7f9f8637400c96b3c7bb41c24cf66b525d9fa4547bd43f5a447",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26388077567"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.4",
      "date": "2026-05-25T07:12:01.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b0e65e629bebb502c1d22791f9b1b5cf279e28bf",
      "fileid": "6b9df1801325bff8d6decf3174724bf6a2399f5ddfdf62ee58bcd5d46ef88337",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26388077567"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.4",
      "date": "2026-05-25T07:12:36.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b0e65e629bebb502c1d22791f9b1b5cf279e28bf",
      "fileid": "7c28313fd3a0b850b758c591b2443a897a0caf32085b991dd360d1246e0fef88",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26388077567"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.4",
      "date": "2026-05-25T07:11:59.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b0e65e629bebb502c1d22791f9b1b5cf279e28bf",
      "fileid": "0ab6c587034d98e83a4809371f5fffe4399c022a053d6ad135b90db73d16e62d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26388077567"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.4",
      "date": "2026-05-25T07:12:06.000Z",
      "arch": "emscripten",
      "commit": "b0e65e629bebb502c1d22791f9b1b5cf279e28bf",
      "fileid": "aa509641cc627aadc085f24a435b1afbf2e6a2be4be6efe252c2f36622ffbbe6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26388077567"
    }
  ]
}