{
  "_id": "6a17f868acfb0bcc41da9510",
  "Package": "mand",
  "Type": "Package",
  "Title": "Multivariate Analysis for Neuroimaging Data",
  "Version": "2.0",
  "Date": "2023-09-14",
  "Authors@R": "person(\"Atsushi\", \"Kawaguchi\", role = c(\"aut\", \"cre\"), email = \"kawa_a24@yahoo.co.jp\")",
  "Maintainer": "Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>",
  "Description": "Several functions can be used to analyze neuroimaging data\nusing multivariate methods based on the 'msma' package. The\nfunctions used in the book entitled \"Multivariate Analysis for\nNeuroimaging Data\" (2021, ISBN-13: 978-0367255329) are\ncontained.",
  "License": "GPL (>= 2)",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-28 08:06:18 UTC",
    "User": "root"
  },
  "Author": "Atsushi Kawaguchi [aut, cre]",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2023-09-12 23:30:54 UTC",
  "RemoteUrl": "https://github.com/cran/mand",
  "RemoteRef": "HEAD",
  "RemoteSha": "bff69b98197dcbcabb983f88d6385247c05adba4",
  "MD5sum": "b18a31b716d3fc41db3e3bbc9036d852",
  "_user": "cran",
  "_type": "src",
  "_file": "mand_2.0.tar.gz",
  "_fileid": "435f057d4a6e36569e8a3fa71c005130a91a0c846f5efa0a3385436ac66ce3cc",
  "_filesize": 1109158,
  "_sha256": "435f057d4a6e36569e8a3fa71c005130a91a0c846f5efa0a3385436ac66ce3cc",
  "_created": "2026-05-28T08:06:18.000Z",
  "_published": "2026-05-28T08:10:16.130Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78249522723,
      "time": 190,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7260841864"
    },
    {
      "job": 78249522716,
      "time": 193,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7260842379"
    },
    {
      "job": 78248737770,
      "time": 310,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7260781842"
    },
    {
      "job": 78249522704,
      "time": 138,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7260825068"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26562464764",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/mand",
  "_commit": {
    "id": "bff69b98197dcbcabb983f88d6385247c05adba4",
    "author": "Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2.0\n",
    "time": 1694561454
  },
  "_maintainer": {
    "name": "Atsushi Kawaguchi",
    "email": "kawa_a24@yahoo.co.jp"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "msma",
      "role": "Depends"
    },
    {
      "package": "oro.nifti",
      "role": "Imports"
    },
    {
      "package": "oro.dicom",
      "role": "Imports"
    },
    {
      "package": "imager",
      "role": "Imports"
    },
    {
      "package": "caret",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 208,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mand"
  },
  "_searchresults": 12,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mand.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1",
      "date": "2020-05-06"
    },
    {
      "version": "1.0",
      "date": "2021-06-29"
    },
    {
      "version": "1.1",
      "date": "2022-05-24"
    },
    {
      "version": "2.0",
      "date": "2023-09-12"
    }
  ],
  "_exports": [
    "atlastable",
    "basisprod",
    "coat",
    "imgdatamat",
    "multicoat",
    "multicompplot",
    "multirec",
    "ptest",
    "rbfunc",
    "rec",
    "simbrain",
    "sizechange"
  ],
  "_datasets": [
    {
      "name": "atlas",
      "title": "Atlas set",
      "object": "atlas",
      "file": "atlas.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "atlasdatasets",
      "title": "Atlas data set",
      "object": "atlasdatasets",
      "file": "atlasdatasets.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "baseimg",
      "title": "Base Brain Data",
      "object": "baseimg",
      "file": "baseimg.rda",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "diffimg",
      "title": "Difference Brain Data",
      "object": "diffimg",
      "file": "diffimg.rda",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "exbrain",
      "title": "Example Brain Data",
      "object": "exbrain",
      "file": "exbrain.rda",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "mask",
      "title": "Brain Mask",
      "object": "mask",
      "file": "mask.rda",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "sdevimg",
      "title": "Standard Deviation Brain Data",
      "object": "sdevimg",
      "file": "sdevimg.rda",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "template",
      "title": "Brain Template",
      "object": "template",
      "file": "template.rda",
      "class": [
        "nifti"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "mand-package",
      "title": "Multivariate Analysis for Neuroimaging Data Package",
      "topics": [
        "mand-package"
      ]
    },
    {
      "page": "atlas",
      "title": "Atlas set",
      "topics": [
        "atlas"
      ]
    },
    {
      "page": "atlasdatasets",
      "title": "Atlas data set",
      "topics": [
        "atlasdatasets"
      ]
    },
    {
      "page": "atlastable",
      "title": "Result report with atlas data",
      "concept": [
        "print"
      ],
      "topics": [
        "atlastable",
        "print.atlastable"
      ]
    },
    {
      "page": "baseimg",
      "title": "Base Brain Data",
      "topics": [
        "baseimg"
      ]
    },
    {
      "page": "basisprod",
      "title": "Product Radial Basis Function",
      "topics": [
        "basisprod"
      ]
    },
    {
      "page": "coat",
      "title": "Coat Function",
      "topics": [
        "coat"
      ]
    },
    {
      "page": "diffimg",
      "title": "Difference Brain Data",
      "topics": [
        "diffimg"
      ]
    },
    {
      "page": "exbrain",
      "title": "Example Brain Data",
      "topics": [
        "exbrain"
      ]
    },
    {
      "page": "imgdatamat",
      "title": "Creat Data Matrix Function",
      "topics": [
        "imgdatamat"
      ]
    },
    {
      "page": "mask",
      "title": "Brain Mask",
      "topics": [
        "mask"
      ]
    },
    {
      "page": "multicoat",
      "title": "Multi Coat Function",
      "topics": [
        "multicoat"
      ]
    },
    {
      "page": "multicompplot",
      "title": "Multi components plot",
      "topics": [
        "multicompplot"
      ]
    },
    {
      "page": "multirec",
      "title": "Multi components reconstruction",
      "topics": [
        "multirec"
      ]
    },
    {
      "page": "ptest",
      "title": "Prediction Model Function",
      "topics": [
        "ptest"
      ]
    },
    {
      "page": "rbfunc",
      "title": "Radial Basis Function",
      "topics": [
        "rbfunc"
      ]
    },
    {
      "page": "rec",
      "title": "Reconstruction",
      "topics": [
        "rec"
      ]
    },
    {
      "page": "sdevimg",
      "title": "Standard Deviation Brain Data",
      "topics": [
        "sdevimg"
      ]
    },
    {
      "page": "simbrain",
      "title": "Generate simulation data Function",
      "topics": [
        "simbrain"
      ]
    },
    {
      "page": "sizechange",
      "title": "Size change Function",
      "topics": [
        "sizechange"
      ]
    },
    {
      "page": "template",
      "title": "Brain Template",
      "topics": [
        "template"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "bitops",
    "bmp",
    "caret",
    "class",
    "cli",
    "clock",
    "codetools",
    "cpp11",
    "data.table",
    "diagram",
    "digest",
    "downloader",
    "dplyr",
    "e1071",
    "farver",
    "foreach",
    "future",
    "future.apply",
    "generics",
    "ggplot2",
    "globals",
    "glue",
    "gower",
    "gtable",
    "hardhat",
    "igraph",
    "imager",
    "ipred",
    "isoband",
    "iterators",
    "jpeg",
    "KernSmooth",
    "labeling",
    "lattice",
    "lava",
    "lifecycle",
    "listenv",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "ModelMetrics",
    "msma",
    "nlme",
    "nnet",
    "numDeriv",
    "oro.dicom",
    "oro.nifti",
    "parallelly",
    "pillar",
    "pkgconfig",
    "plyr",
    "png",
    "pROC",
    "prodlim",
    "progressr",
    "proxy",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "readbitmap",
    "recipes",
    "reshape2",
    "rlang",
    "RNifti",
    "rpart",
    "S7",
    "scales",
    "shape",
    "sparsevctrs",
    "SQUAREM",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "tiff",
    "timechange",
    "timeDate",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "b_Introduction.Rmd",
      "filename": "b_Introduction.html",
      "title": "Introduction",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Preparation",
        "Template",
        "Image Data Matrix",
        "Overlay",
        "Atlas"
      ],
      "created": "2021-06-29 04:00:02",
      "modified": "2021-06-29 04:00:02",
      "commits": 1
    },
    {
      "source": "c_Brain_Imaging_Data.Rmd",
      "filename": "c_Brain_Imaging_Data.html",
      "title": "Brain Imaging Data",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Affine transformation",
        "Resize",
        "Smoothing",
        "1D Gauss function",
        "Preparation",
        "Smoothing flow",
        "FWHM and smoothed data"
      ],
      "created": "2021-06-29 04:00:02",
      "modified": "2021-06-29 04:00:02",
      "commits": 1
    },
    {
      "source": "d_Common_Statistical_Approach.Rmd",
      "filename": "d_Common_Statistical_Approach.html",
      "title": "Common Statistical Approach",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Random Field Theory",
        "Original data and function",
        "Differences with CDT",
        "FWHM and cluster above CDT",
        "Simple example for cluster size test",
        "Cluster Level Inference",
        "Cluster p-value",
        "TFCE",
        "TFCE process",
        "FWHM and TFCE",
        "Permutation test",
        "Permutation based multiple correction"
      ],
      "created": "2021-06-29 04:00:02",
      "modified": "2021-06-29 04:00:02",
      "commits": 1
    },
    {
      "source": "e_Multivariate_Approach_Matrix_Decomposition.Rmd",
      "filename": "e_Multivariate_Approach_Matrix_Decomposition.html",
      "title": "Matrix Decomposition",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Data reshape",
        "Preparation",
        "Generate Simulation Data",
        "Principal Component Analysis",
        "Two-steps dimension reduction",
        "Methods",
        "Sparse PCA",
        "Supervised Sparse PCA",
        "Characteristics",
        "Impact seppix",
        "Impact lambda",
        "Penalty Functions",
        "Parameter Selection",
        "Other Methods",
        "Cluster Analysis"
      ],
      "created": "2021-06-29 04:00:02",
      "modified": "2022-05-24 09:50:02",
      "commits": 2
    },
    {
      "source": "f_Multivariate_Approach_Prediction_Model.Rmd",
      "filename": "f_Multivariate_Approach_Prediction_Model.html",
      "title": "Prediction Model",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Data reshape",
        "Preparation",
        "Logistic Regression Model",
        "Support Vector Machine",
        "Tree Model",
        "Random Forests",
        "Evaluation",
        "Logistic regression model",
        "SVM",
        "Tree",
        "Random Forest",
        "Deep learning"
      ],
      "created": "2021-06-29 04:00:02",
      "modified": "2021-06-29 04:00:02",
      "commits": 1
    },
    {
      "source": "g_Multi-block_Approach.Rmd",
      "filename": "g_Multi-block_Approach.html",
      "title": "Multi-block Approach",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Multi-block PCA",
        "Generate simulation data",
        "Supervised multi-block PCA",
        "PLS",
        "Supervised sparse PLS"
      ],
      "created": "2021-06-29 04:00:02",
      "modified": "2021-06-29 04:00:02",
      "commits": 1
    },
    {
      "source": "a_overview.Rmd",
      "filename": "a_overview.html",
      "title": "Overview for mand",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Template",
        "Image Data Matrix",
        "Overlay",
        "Atlas",
        "Principal Component Analysis",
        "Generate Simulation Data",
        "Two-steps dimension reduction",
        "Basis Expansion",
        "Sparse PCA",
        "Supervised Sparse PCA"
      ],
      "created": "2021-06-29 04:00:02",
      "modified": "2023-09-12 23:30:54",
      "commits": 2
    }
  ],
  "_score": 2.924279286061882,
  "_indexed": true,
  "_nocasepkg": "mand",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0",
      "date": "2026-05-28T08:08:50.000Z",
      "distro": "noble",
      "commit": "bff69b98197dcbcabb983f88d6385247c05adba4",
      "fileid": "f8a0782f2593db8001954320ce646e7b75a4d4a05a26af5820e1dd3584d5755c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26562464764"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0",
      "date": "2026-05-28T08:08:53.000Z",
      "distro": "noble",
      "commit": "bff69b98197dcbcabb983f88d6385247c05adba4",
      "fileid": "a96ad899eb42938fac67e84e3399ed78cbd0a0675c5c6272c0c85912679b5ced",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26562464764"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0",
      "date": "2026-05-28T08:09:02.000Z",
      "commit": "bff69b98197dcbcabb983f88d6385247c05adba4",
      "fileid": "a8128d1a7214cace4d059b763906788542fb45d72985017181287d2f8b51059e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26562464764"
    }
  ]
}